New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	= 1298962	10 (0.670)	3 (0.200)	3/284	1.8	23.3%	coding (365/648 nt)	ychE	UPF0056 family inner membrane protein
	?	NC_000913_3_vch_pgi	= 1298992	10 (0.680)					coding (395/648 nt)	ychE	UPF0056 family inner membrane protein

TGGTGACAATAGCGATGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTGGGGTACGCGTTATCACAGCATTAGCTATCTGTTTGGTTTCTTTGTGGCTATTGCATTGTTCGCTTTATGTTGTTGGGGATTGTTCCGCATGGCACCGTGGCTGGTACGGGTTTTACGCCA  >  NC_000913_3_vch_pgi/1298857‑1299136                                                                                                                                        |                                                                                                                                                 tggggACAATAGCGATGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGGTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCt                                                                                                                                     <  1:145780/149‑1 (MQ=255)       cAATAGCGATGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATc                                                                                                                               <  2:111725/149‑1 (MQ=255)             cGATGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTgg                                                                                                                         <  1:221369/149‑1 (MQ=255)               aTGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTgggg                                                                                                                       >  1:178365/1‑149 (MQ=255)                              ggCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTGGGGACCGCGTTATCACAg                                                                                                        >  2:125111/1‑149 (MQ=255)                                                                                 gTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTGGGGTACGCGTTATCACAGCATTAGCTATCTGTTTGGTTTCTTTGTGGCTATTGCATTGTTCGCTTTAtg                                                     <  1:256493/149‑1 (MQ=255)                                                                                    tgggAAAGCATTGGTGTGGTGCTACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTGGGGTACGCGTTATCACAGCATTAGCTATCTGTTTGGTTTCTTTGTGGCTATTGCATTGTTCGCTTTAtgttg                                                  <  2:199907/146‑1 (MQ=255)                                                                                                    tggtgCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGggcaccacaccaatgctttcacgtaccgcggtttctgatttttcttgcttgttctgtttatcctcgccaagcttgccgctgatcatc                                                           >  1:3478‑M2/1‑37 (MQ=255)                                                                                                    tggtgCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGggcaccacaccaatgctttcacgtaccgcggtttctgatttttcttgcttgttctgtttatcctcgccaagcttgccgctgatcatc                                                           <  2:3478‑M2/124‑88 (MQ=255)                                                                                                                 gTTGGCGTTGATGGAGGGGCGAGGGGTGATTAGTTCTACCATCGTTTGGGGTACGCGTTATCACAGCATTAGCTATCTGTTTGGTTTCCTTGTGGCTATGGCATTGTTCGCTTTATGTTGTTGGGGATTGTTCCGCATGGCACCGTGGc                     <  2:238805/149‑1 (MQ=255)                                                                                                                             ggCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTGGGGTACGTGTTATCACAGCATTAGCTATCTGTTTGGTTTCTTTGTGGCTATTGCATTGTGCGCTTTATGTTGTTGGGGATTGTTCCGCATGGCACCGTGGCTGGTACGGGttt         <  1:175622/149‑1 (MQ=255)                                                                                                                                   gCCAGGggcaccaccccaatgctttcacgtaccgcggttgccgatttttattgtatgttcggtttaccctcgccaagcttgccgctgatcatcgacatcgctattgtcaccaccaggatacccccggcgatacggaacgaatcaattga   >  1:184299‑M2/1‑6 (MQ=255)                                                                                                                                    ccAGGGGCGATCAGTTCTACCATCGTCTGGGGTACGCGTTATCACAGCATTAGCTATCTGTTTCGTTTCTTTGTGGCTATTGCATTGTTCGCTTTATGTTGTTGGGGATTGTTCCGCATGGCACCGTGGCTGGTACGGGTTTTACGCCa  >  1:234094/1‑149 (MQ=255)                                                                                                                                        |                                                                                                                                                 TGGTGACAATAGCGATGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTGGGGTACGCGTTATCACAGCATTAGCTATCTGTTTGGTTTCTTTGTGGCTATTGCATTGTTCGCTTTATGTTGTTGGGGATTGTTCCGCATGGCACCGTGGCTGGTACGGGTTTTACGCCA  >  NC_000913_3_vch_pgi/1298857‑1299136

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.