New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	2955129 =	15 (1.000)	3 (0.210)	3/278	1.8	18.5%	coding (875/3543 nt)	recB	exonuclease V (RecBCD complex), beta subunit
	?	NC_000913_3_vch_pgi	2955151 =	12 (0.830)					coding (853/3543 nt)	recB	exonuclease V (RecBCD complex), beta subunit
Rejected: Frequency below/above cutoff threshold.

ACTGTTTCGCGGATCTCAGCCAATGCGCGGGTGATCACCAGATCGCGGATCGACAATGGTTCTGCAAGCAGTTGATCGATCGCCTCAAACAGTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTAAGAAACGCTGGGAGAATTTTTCCAGCGACTCCGGCAACTGATAACTGTTTGTCTCTTCTTCTGCCCAGGCGCTGATCTTGTCGATCCATTTAGCCTGATTGCTACGGTTAAACTTGCGTCGATCAATACCAGAAGATTCG  >  NC_000913_3_vch_pgi/2954988‑2955263                                                                                                                                              |                                                                                                                                       aCTGTTGCGCGGATCTCAGTCAATGCGCGGGTGATCACCAGCTCGCGGATCGACAATTGTTCTGCAAGCAGTTGATCGATCGCCTCAAACAGTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTAAGTAACGCTGGga                                                                                                                                 <  2:11687/149‑1 (MQ=255)    gTTTCGCGTATCTCAGCCAATGCTCGGGTGATCACCAGATCGCGGATCGACAATGGTTCTGCAAGCAGTTGATCGATCGCCTCAAACAGTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTAAGAAACGCTGGGAGaa                                                                                                                              <  1:98449/149‑1 (MQ=255)    gTTTCGCGGATCTCAGCCAATGCGCGGGTGATCACCAGATCGCGGATCGACAATGGTTCTGCAAGCAGTTGATCGATCGCCTCAAACAGTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTAAGAAACGCTGGGAGaa                                                                                                                              <  1:94767/149‑1 (MQ=255)         ggtgaactggatgcgctgatcgaatattctggtattgatcgacgcaagtttaaccgtagcaatcaggctaaatggatcgacaagatcagcgcctgggcagaagaacagacaaacagttagaagttgccgacgtCACTGGCagaatgcgc                                                                                                                         <  1:255071‑M1/16‑5 (MQ=255)                ttaGCCAATGCGCGGGTGATCACCAGATCGCGGATCGACAATGGTTCTGCAAGCAGTTGATCGATCGCCTCAAACAGTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTAAGAAACGCTGGGAGAATTTTTCCAGCGa                                                                                                                  <  2:266409/147‑1 (MQ=255)                                          aTCGCGGATCGATAATGGTTCTGCAAGCAGTTGATCGATCGCCTCAAACAGTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTAAGAAACGCTGGGAGAATTTTTCCAGCGACTCCGGCAACTGATAACTGTTTGtct                                                                                        <  2:158845/149‑1 (MQ=255)                                               ggATCGACAATGGTTCTGCAAGCAGTTGATCGATCGCCTCAAACAGTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCTTGCGATCTTCTAAGAAACGCTGGTAGAATTTTTCCACCGACTCCGCCAACTGATAACTGTTTGTCtcttct                                                                                   >  1:214015/1‑149 (MQ=255)                                                                gCAAGCAGTTGATCGATCGCCTCAAACAGTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTAAGAAACGCTGGGAGAATTTTTCCAGCGACTCCGGCAACTGATAACTGTTTGTCTCTTCTTCTGCCCAGGCGCTGAt                                                                  <  1:220403/149‑1 (MQ=255)                                                                 cAAGCAGTTGATCGATCGCCTCAAACAGTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTAAGAAACGCTGGGAGAATTTTTCCAGCGACTCCGGCAACTGATAACTGTTTGTCTCTTCTTCTGCCCAGGCGCTGATc                                                                 >  1:213286/1‑149 (MQ=255)                                                                      aGTTGATCGATCGCCTCAAACAGTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTAAGAAATGCTGGGAGAATTTTTCCAGCGACTCCGGCAACTGATAACTGTTTGTCTCTTCTTCTGCCCAGGCGCTGATCTTGTc                                                            <  2:229725/149‑1 (MQ=255)                                                                          gctcgatcgCCTCAAACAGTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTAAGAAACGCTGGGAGAATTTTTCCAGCGACTCCGGCAACTGATAACTGTTTGTCTCTTCTTCTGCCCAGGCGCTGATCTTGTCGATc                                                        <  1:17001/147‑1 (MQ=255)                                                                              gatcgCCTCAAACAGTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTACGAAACGCTGGGAGAATTTTTCCAGCGACTCCGGCAACTGGTAACGGTTTGTCTCTTCTTCTGCCCAGGGGCTGATCTTGTCGATCCAtt                                                    >  2:5776/1‑149 (MQ=255)                                                                                    atcgacaagatcagcgcctgggcagaagaagagacaaacagttatcagttgccggagtCGCTGGGAGAATTTTTCCAGCGACTCCGGCAACTGATAACTGTTTGtctc                                                                                       >  1:66390‑M1/59‑108 (MQ=255)                                                                                    atcgacaagatcagcgcctgggcagaagaagagacaaacagttatcagttgccggagtCGCTGGGAGAATTTTTCCAGCGACTCCGGCAACTGATAACTGTTTGtctc                                                                                       <  2:66390‑M1/50‑1 (MQ=255)                                                                                            gTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTAAGACACGCTGGGAGAATTTTTCCAGCGACTCCGGCAACTGATAACTGTTTGTCTCTTCTTCTGCCCAGGCGCTGATCTTGTCGATCCATTTAGCCTGATTGCTa                                      <  2:171405/149‑1 (MQ=255)                                                                                                    cgcgGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTAAGAAACGCTGGGAGAATTTTTCCAGCGACTCCGGCAACTGATAACTGTTTGTCTCTTCTTCTGCCCAGGCGCTGATCTTGTCGATCCATTTAGCCTGATTGCCACGGTTaaa                              <  2:203712/149‑1 (MQ=255)                                                                                                                               cGATCTTCTAAGAAACGCTGGGAGAATTTTTCCAGCGACTCCGGCAACTGATAACTGTTTGTCTCTTCTTCTGCCCAGGCGCTGATCTTGTCGATCCATTTAGCCTGATTGCTACGGTTAAACTTGCGTCGATCAATACCAGAAGATTc   <  1:49953/149‑1 (MQ=255)                                                                                                                                gATCTTCTAAGAAACGCTGGGAGAATTTTTCCGGCGACTCCGGCAACTGATATCTGTTTGTCTCTTCTTCTGCCCAGGCGCTGATCTTGTCGATGCATTTAGCCTGATTGCTAAGGTTAGACTTGCGTCGATCAATACCGGGAGATTCg  >  2:145033/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                       ACTGTTTCGCGGATCTCAGCCAATGCGCGGGTGATCACCAGATCGCGGATCGACAATGGTTCTGCAAGCAGTTGATCGATCGCCTCAAACAGTGGATGTCGCGGGGTTTCCCCCCCGGCCTTCGTGCGATCTTCTAAGAAACGCTGGGAGAATTTTTCCAGCGACTCCGGCAACTGATAACTGTTTGTCTCTTCTTCTGCCCAGGCGCTGATCTTGTCGATCCATTTAGCCTGATTGCTACGGTTAAACTTGCGTCGATCAATACCAGAAGATTCG  >  NC_000913_3_vch_pgi/2954988‑2955263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.