| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 2505963 = | 27 (1.400) | 3 (0.160) | 3/278 | 2.5 | 11.1% | coding (670/1086 nt) | ypdF | Xaa‑Pro aminopeptidase |
| ? | NC_000913_3_vch_pgi | 2505985 = | 22 (1.190) | coding (648/1086 nt) | ypdF | Xaa‑Pro aminopeptidase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCTGCAACAATCTTGTCGCTGGCTTTGCCGTGCGGCAGCGCCCCACGCCAGCCACTGGCGACAATGGTGTCAAAAGAGGCTTTTTCTGCGCCCTGCTGGCGCATAAACCACTC > NC_000913_3_vch_pgi/2505837‑2506131 | aGCGCACGCCGGGGCGAATCGCGGAGGTTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTGAACGGCAGGTGAGATTGGGGGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCGGAGCAGTAGCCCTGATAc > 2:259438/1‑149 (MQ=255) tCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGAAAGGTGCGCGTCATATCAGAGCAGTCGCCCTGCTACAGCGCACCGAAATCgaga > 1:147328/1‑149 (MQ=255) ggAGATGGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGa < 2:55754/149‑1 (MQ=255) gctgctGGCTTTGCCTGCCGGACAATTTGATCGGCGTTAATCAGCCGGTTACATTCGGCGCTCAGCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTc < 2:273911/149‑1 (MQ=255) tgcGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAg < 1:63585/120‑1 (MQ=255) tgcGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAg > 2:63585/1‑120 (MQ=255) tgcGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTCGc > 2:265373/1‑149 (MQ=255) tgtgCCTGCAGGACAATTTGATAGACGTTAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGAAGTAGCCCTGATACAGCCCACCGAAATCGAGAGTGACAAACTCCCCCGCTGc > 2:149474/1‑149 (MQ=255) tGCAGGACGATTTGATAGACGTTAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCTGCAACAAt < 1:118773/149‑1 (MQ=255) gCAGGACAATTTGATAGACGTTAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCTGCAACAATc < 1:282836/149‑1 (MQ=255) gCAGGACAATTTGATAGACGTTAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCTGCAACAATc < 1:282876/149‑1 (MQ=255) ggACAATTTGATAGACGTTAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGTGGGAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCTGCAACAATCTTg > 1:334445/1‑149 (MQ=255) aTTTGATAGACGTTAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACCCGCCCGCTGCAACAGTCTTGTCCCt > 2:79748/1‑149 (MQ=255) ttAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCTg < 1:298626/121‑1 (MQ=255) ttAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCTg > 2:298626/1‑121 (MQ=255) agcagGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCTGCAACAATCTTGTCGCTGGCTTTGCCGTGCGGCAg > 1:221172/1‑149 (MQ=255) gagaTTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCTGCAACAATCTTGTCGCTGGCTTTGCCGTGCGGCAGCGCCCCa < 1:268561/149‑1 (MQ=255) agcgggcgagtttgtcactctcgatttcggtgcgctgTATCAGAGCAGTAGCCCTGATACa < 1:99120‑M1/24‑1 (MQ=255) agcgggcgagtttgtcactctcgatttcggtgcgctgTATCAGAGCAGTAGCCCTGATACa > 2:99120‑M1/38‑61 (MQ=255) tCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCTGCAACAATCTTGTCGCTGGCTTTGCCGTGCGGCAGCGCCCCACGCCAGCCACTg > 1:315/1‑149 (MQ=255) ccTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCCGATACAGCGCACCGCGAACCAGACTGACAAACTCGCCCGCTGCAACAATCTTTTCACTAGCTTTGCCCTACGGCAGCGCCCCACGCCAGCCACTGGCGAc > 2:165961/1‑149 (MQ=255) cTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCCCAGAATTCCAGGGTGACAAACTCGCCCGATGCAAAAATCTTACCGCAGGCTTTGCCGTGCGCCCGCTCCCCGCGCCCGCCCCTGGCcaca > 2:237076/1‑149 (MQ=255) tgtatcagggctactgctctgataCAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCt > 2:99120‑M2/25‑61 (MQ=255) tgtatcagggctactgctctgataCAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCt < 1:99120‑M2/37‑1 (MQ=255) tatcagggctactgctctgataCAGCGCAACGAAATCGAGAGTGACAAACTCGCCCGCTGCAACAATCTTGTCGCTGGCTTTGCCGTGCGGCAGCGCCCCACGCCAGCCACTGGCGACAATGGTGTCAAAAGAGGCTTTTTCTGTGccc > 1:288093‑M2/23‑149 (MQ=255) agagCAGTCGCCCTGATACAGCGCAACGAGTAAGATTGGGAGAAACTCGCCCGCTGCAACAATCTTGTCGCTGGCTTTGCCGTGCCGCAGCGCCACACGCCAGCCACTGGCGCGAATGGTGTCAAAAGGGGCTTTTTCTGCTCCctgct > 2:244255/1‑149 (MQ=255) AGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCTGCAACAATCTTGTCGCTGGCTTTGCCGTGCGGCAGCGCCCCACGCCAGCCACTGGCGACAATGGTGTCAAAAGAGGCTTTTTCTGCGCCctgct > 1:265373‑M1/1‑149 (MQ=255) ccTGATACAGCGCACCGTAATCGAGAGTGACAAACTCGCCCGCTGCAACAATCTTGTCGCTGGCTTTGCCGTGCGGCAGCGCCCCACGCCAGCCACTGGCGACAATGGTGTCAAAAGACGCGTTTTCTCCGCCCTGCTGGCGCTTAAAc < 1:331019/149‑1 (MQ=255) taCAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCTGCAACAATCTTGTCGCTGGCTTTGCCGTGCGGCAGCGCCCCACGCCAGCCACTGGCGACAATGGTGTCAAAAGAGGCTTTTTCTGCGCCCTGCTGGCGCATAAACCACTc < 2:171566‑M2/147‑1 (MQ=255) | AGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACAGCAGGTGAGATTCGGCGCTCACCCCTTCGCCATTCACCAGCAAGGTGCGCGTCATATCAGAGCAGTAGCCCTGATACAGCGCACCGAAATCGAGAGTGACAAACTCGCCCGCTGCAACAATCTTGTCGCTGGCTTTGCCGTGCGGCAGCGCCCCACGCCAGCCACTGGCGACAATGGTGTCAAAAGAGGCTTTTTCTGCGCCCTGCTGGCGCATAAACCACTC > NC_000913_3_vch_pgi/2505837‑2506131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |