| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 1671424 = | 11 (0.600) | 3 (0.170) | 3/278 | 2.3 | 21.0% | coding (49/309 nt) | asr | acid shock‑inducible periplasmic protein |
| ? | NC_000913_3_vch_pgi | 1671444 = | 12 (0.680) | coding (69/309 nt) | asr | acid shock‑inducible periplasmic protein | |||||
GGAAGTCTGCCATTCCCAGGGATATAGTTATTTCAACGGCCCCGCAGTGGGGTTAAATGAAAAAACAAATTGAGGGTATGACAATGAAAAAAGTATTAGCTCTGGTTGTTGCCGCTGCTATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGCCCAGAAAGCGCAGGCGGCTAAAAAGCAT > NC_000913_3_vch_pgi/1671293‑1671564 | ggAAGTCTGCCATTCCCAGGGATATAGTTATTTCAACGGCCCCGCAGTGGGGTTAAATGAAAAAACAAATTGAGGGTATGACAATGAAAAAAGTATTAGCTCTGGTTGTTGCCGCTGCTATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCa < 1:272661/149‑1 (MQ=255) tgcttttttgccctctgcgctttctgggcaggtgctgctttatgctgttttttatgatgtgttgttttcgccggcgctgctttggtggccgtcgcagtcggagcaggtgtggtcgtagtcTTCTGCCGCCTTTGCTGCAGAGACTACGa > 1:230203‑M1/121‑149 (MQ=255) aGGGATATAGTTATTTCAACGGCCCCGCAGTGGGGTTAAATGAAAAAACAAATTGAGGGTATGACAATGAAAAAAGTATTAGCTCTGGTTGTTGCCGCTGCTATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACAcc > 1:63399/1‑149 (MQ=255) tCAACGGCCCCGCAGTGGGGTTAAATGAAAAAACAAATTGAGGGTATGACAATGAAAAAAGTATTAGCTCTGGTTGTTGCCGCTGCTATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGcgac < 1:311576/149‑1 (MQ=255) aCGGCCCCGCAGTGCGTTTAAATGAAAAAACAAATTGATGGTATGACAAGGAAAAAAGTATTAGCTCTGGTTGTTGCCGCTGCTATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCgacgac < 1:234092/149‑1 (MQ=255) aaaCAAATTGAGGGTATGACAATGAAAAAAGTATTAGCTCTGGTTGTTAACAATACTAGGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTac < 1:9495/149‑1 (MQ=255) aTGACAATGAAAAAAGTACTAGCTCTGGTTGTTGCCGCTCCTATGGGACTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACa < 1:246111/149‑1 (MQ=255) tggtcgtcgcagtcggagcaggtgtggtcgtagtcT‑CTGCCGCCTTTGCTGCAgaga > 1:197106‑M1/36‑57 (MQ=255) tggtcgtcgcagtcggagcaggtgtggtcgtagtcT‑CTGCCGCCTTTGCTGCAgaga < 2:197106‑M1/22‑1 (MQ=255) aGCTCTGGTTGTTGCCGCTGCGATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGccc < 1:55654/149‑1 (MQ=255) gCTCTGGTTGTTGCCGCTGCTATGGGAGTGTCTT‑CTTCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAACCAGCATAAAGCAGCCCCTGCCCa > 2:232667/1‑149 (MQ=255) ctATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGCCCAGAAAGCGCAGGCGGCTaaa > 1:83087/1‑149 (MQ=255) aTGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGCCCAGAAAGCGCAGGCGGCTaaaaa < 2:83087/149‑1 (MQ=255) gtctgtctT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGCCCAGAAAGCGCAGGCGGCTAAAAAGcat > 1:183991/1‑149 (MQ=255) | GGAAGTCTGCCATTCCCAGGGATATAGTTATTTCAACGGCCCCGCAGTGGGGTTAAATGAAAAAACAAATTGAGGGTATGACAATGAAAAAAGTATTAGCTCTGGTTGTTGCCGCTGCTATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGCCCAGAAAGCGCAGGCGGCTAAAAAGCAT > NC_000913_3_vch_pgi/1671293‑1671564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |