| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 3645087 = | 17 (0.930) | 4 (0.230) | 4/274 | 1.9 | 19.9% | coding (96/2043 nt) | prlC | oligopeptidase A |
| ? | NC_000913_3_vch_pgi | 3645120 = | 16 (0.920) | coding (63/2043 nt) | prlC | oligopeptidase A | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGGGAGAAGATACGCCCCAACACATCGTCCACTTCCGCCAGCGGCTGGCAGAGATTTTCCCAGGTGTACGGTGCCCCTTGCGCTACTACGCGCTCCACGTTTTCGCGGCAGTCGTTCAATGCCTTAGTCACGGCTGGAACGACATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGTTAAAGAGGTTAAGGAAGCGCTCAACAGGCGCTTTACATAATGTGTGTAGCATGGGGTTAAG > NC_000913_3_vch_pgi/3644976‑3645258 | cGGGGAGAAGATACGCCCCAACACATCGTCCACTTCCGCCAGCGGCTGGCAGAGATTTTCCCAGGTGTACGGTGCCCCTTGCGCTACTACGCGCTCCACGTTTTCGCGGCAGTCGTTCAATGCCTTAGTCACGGCTGGAACGACATggt > 2:188822/1‑147 (MQ=255) aagaTACACCCCAACACATCGTCCACTACCGCCAGCCGCCGGCACAGATAGTCCCAGGTGTACGGTGCCCCATACGCTACGACGCGCTCCACAATCTCCCTGCAGCCCGTCAACGCCTTAGCCCCGGCTGAACCGACAAGTCCCggaaa > 2:101805/1‑146 (MQ=255) caTCGTCCACTTCCGCCAGCGGCTGGCAGAGATTTTCCCAGGTGTACGGTGCCCCTTGCGCTACTACGCGCTCCACGTTTTCGCGGCAGTCGTTCAATGCCTTAGTCACGGCTGGAACGACATGTTCCGGGAGAATTTTAGAAAACGGa < 2:55415/149‑1 (MQ=255) ctctttaaccaggactgcgcgaatgacgaatccgttactgactccctttgaattgcctccgttttctaaaattctcccggaacatGTCGTTCAATGCCTTAGTCACGGCTGGAACGACATGTTCCGGga > 1:21726‑M1/86‑129 (MQ=255) ctctttaaccaggactgcgcgaatgacgaatccgttactgactccctttgaattgcctccgttttctaaaattctcccggaacatGTCGTTCAATGCCTTAGTCACGGCTGGAACGACATGTTCCGGga < 2:21726‑M1/44‑1 (MQ=255) ccAGGTGTACGGTGCCCCTTGCGCTACTACGCGCTCCACGTTTTCGCGGCAGTCGTTCAATGCCTTAGTCACGGCTGGAACGACATGTTCCGGGAGAATTCTAAAAAACGGAGGCAAATCAAAGGGAGTCAGTAACGGCTTCGTCATTc > 1:43444/1‑149 (MQ=255) gTGCCCCTTGCGCTAGTACGCGCTCCACGTTTTCGCGGCAGTCGTTCAATGCCTTAGTCACGGCTGGAACGACATGTTCCGGGAGAATTTTAGAAAACTGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTg < 2:258154/149‑1 (MQ=255) cgcTACTACGCGCTCCACGTTTTCGCGGCAGTCGTTCAATGCCTTAGTCACGGCTGGAACGACATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGTTAAAGAgg > 2:146155/1‑149 (MQ=255) gcTACTACGCGCTCCACGTTTTCGCGGCAGTCGTTCAATGCCTTAGTCACGGCTGGAACGACATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGTTAAAGAGGt > 1:306730/1‑149 (MQ=255) cgcTCCACGTTTTCGCGGCAGTCGTTCAATGCCTTAGTCACGGCTGGAACGACATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGTTAAAGAAGTTAAGGAAgc < 1:15261/149‑1 (MQ=255) cgcTCCACGTTTGCGCGGCAGTCGTTCAATCCCTTAGTCACGGCTGGAACGATATGTGCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACTGATTCGTCATTCGCGCAGTCCTGGTTAAAGAGGTTAAGGAAgc < 1:14365/149‑1 (MQ=255) tcccggaacatgtcgttccagccgtgactaaggcattgaacgacATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGTTAAagag > 1:21726‑M2/45‑129 (MQ=255) tcccggaacatgtcgttccagccgtgactaaggcattgaacgacATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGTTAAagag < 2:21726‑M2/85‑1 (MQ=255) tgtcgttccagccgtgactaaggcattgaacgaca > 1:48128‑M2/35‑35 (MQ=255) tgtcgttccagccgtgactaaggcattgaacgaca < 2:48128‑M2/1‑1 (MQ=255) tGTCGTTCAATGCCTTAGTCACGGCTGGAACGACa < 2:48128‑M1/34‑1 (MQ=255) tGTCGTTCAATGCCTTAGTCACGGCTGGAACGACa > 1:48128‑M1/2‑35 (MQ=255) GTTCAATGCCTTAGTCACGGCTGGAACGACATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGTTAAAGAGGTTAAGGAAGCGCTCAACAGGCGCTTTACATAAt < 1:4493‑M1/149‑1 (MQ=255) TTCAATTGCTTAGTCACGGCTGGAACGACATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTCACGGATTCGTCATTCGCGCAGTCCTGGTTAAAGAGGTTAAGGAAGCGCTCAACAGGCGCTTTACATAAtg > 1:108518‑M1/1‑149 (MQ=255) aaTGCCTTAGTCACGGCTGGAACGACATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGTTAAAGAGGTTAAGGAAGCGCTCAACAGGCGCTTTACATAAtgtgt < 1:107412/149‑1 (MQ=255) cTTAGTCACGGCTGGAACGACATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTACTGGTTAAAGAGGTTAAGGAAGCGCTCAACAGGCGCTTTACATCATGTGTGTAGc > 1:124841/1‑149 (MQ=255) tCACGGCTGGAACGACATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGTTAAAGAGGTTAAGGAAGCGCTCAACAGGCGCTTTACATAATGTGTGTAGCATggg > 1:195440/1‑149 (MQ=255) taCGGCTGGAACGATATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTGAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGGTAAAGAGGTTAAGGAAGCGCTCAACAGGCGCTTTACATAATGTGTGTAGCATgggg < 2:112190/148‑1 (MQ=255) cTGGAACGACATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGTTAAAGAGGTTAAGGAAGCGCTCAACAGGCGCTTTACATAATGTGTGTAGCATGGGGTTAAg > 1:170372/1‑149 (MQ=255) ggAACGACATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGTTAAAGAGGTTAAGGAAGCGCTCAACAGGCGCTTTa < 1:7485/121‑1 (MQ=255) ggAACGACATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGTTAAAGAGGTTAAGGAAGCGCTCAACAGGCGCTTTa > 2:7485/1‑121 (MQ=255) | CGGGGAGAAGATACGCCCCAACACATCGTCCACTTCCGCCAGCGGCTGGCAGAGATTTTCCCAGGTGTACGGTGCCCCTTGCGCTACTACGCGCTCCACGTTTTCGCGGCAGTCGTTCAATGCCTTAGTCACGGCTGGAACGACATGTTCCGGGAGAATTTTAGAAAACGGAGGCAATTCAAAGGGAGTCAGTAACGGATTCGTCATTCGCGCAGTCCTGGTTAAAGAGGTTAAGGAAGCGCTCAACAGGCGCTTTACATAATGTGTGTAGCATGGGGTTAAG > NC_000913_3_vch_pgi/3644976‑3645258 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |