New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_pgi = 348404314 (0.630)4 (0.190) 4/274 2.5 23.2% coding (842/1023 nt) yheT UPF0017 family putative hydrolase
?NC_000913_3_vch_pgi = 3484049 13 (0.610)coding (848/1023 nt) yheT UPF0017 family putative hydrolase

CGCATCCGTGAATTTGACGATCTCATCACCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATGGCGGTCATGTTGGCTTTATTGGCGGTACATTACTTCATCCGCAAATGTGGCTGGAGTCACGCATTC  >  NC_000913_3_vch_pgi/3483901‑3484183
                                                                                                                                              |                                                                                                                                            
cGCATCCGTGAATTTGACGATCTCATCACCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTAt                                                                                                                                        <  1:110933/149‑1 (MQ=255)
                  gATCTCATCACCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCataaacggatcgt                                                                                                                                 >  2:290746‑M1/1‑125 (MQ=255)
                  gATCTCATCACCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCataaacggatcgt                                                                                                                                 <  1:290746‑M1/138‑14 (MQ=255)
                  gATCTCATCACCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATccc                                                                                                                      >  1:196694/1‑149 (MQ=255)
                     ctcATCACCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGaa                                                                                                                   >  1:109617/1‑149 (MQ=255)
                        atcaCCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAAcc                                                                                                                >  2:312695/1‑149 (MQ=255)
                             cGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGaaa                                                                                                           >  1:366923/1‑149 (MQ=255)
                                                                      gTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCACCGCAGGGGGAGTATCAACTGACTAAACATGGc                                                                  >  2:325182/1‑149 (MQ=255)
                                                                                         gATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATg                                                                    <  1:284119/128‑1 (MQ=255)
                                                                                         gATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATg                                                                    >  2:284119/1‑128 (MQ=255)
                                                                                            gCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGGCTCCCCCCGCCGGTGGAGTATCAACTGGCTGAACATGGCGGTCATGTTGGCTTTATTGGCg                                            <  2:21650/149‑1 (MQ=255)
                                                                                                 aCCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCataaacggatcgtct                                                                                                                               <  2:114523‑M1/61‑16 (MQ=255)
                                                                                                 aCCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCataaacggatcgtct                                                                                                                               >  1:114523‑M1/1‑46 (MQ=255)
                                                                                                               ccGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATGGCGGTCATGTTGGCTTTATTGGCGGTACATTACTTCATCCGCa                         <  1:165501/149‑1 (MQ=255)
                                                                                                                cGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATGGCGGTCATGTTGGCTTTATTGGCGGTACATTACTTCATCCGCaa                        >  1:263492/1‑149 (MQ=255)
                                                                                                                               aCGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAactgact                                                                           >  1:32191/1‑83 (MQ=255)
                                                                                                                               aCGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAactgact                                                                           <  2:32191/83‑1 (MQ=255)
                                                                                                                                      agagGATTCGTTGATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATGCCGGTCCTGTTGGCTTTATTGGCGGTACATTACTTCATCCGCAAATGTGGCTGGAGTCACGCATTc  <  1:112150/149‑1 (MQ=255)
                                                                                                                                      aGACGATCCGTTTATggatcgtctttggcgtgaataatcagcgtcggtttggcgatccggt                                                                                          <  2:114523‑M2/61‑47 (MQ=255)
                                                                                                                                      aGACGATCCGTTTATggatcgtctttggcgtgaataatcagcgtcggtttggcgatccggt                                                                                          >  1:114523‑M2/1‑15 (MQ=255)
                                                                                                                                        aCGATCCGTTTATggatcgtctttggcgtgaataatcagcgtcggtttggcgatccggttcagcatcggcatggcgctacactgacgataatagtcgatagcgtcggcgtagccgtgaattctggcggtgatgagatc           <  1:290746‑M2/138‑126 (MQ=255)
                                                                                                                                        aCGATCCGTTTATggatcgtctttggcgtgaataatcagcgtcggtttggcgatccggttcagcatcggcatggcgctacactgacgataatagtcgatagcgtcggcgtagccgtgaattctggcggtgatgagatc           >  2:290746‑M2/1‑13 (MQ=255)
                                                                                                                                              |                                                                                                                                            
CGCATCCGTGAATTTGACGATCTCATCACCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATGGCGGTCATGTTGGCTTTATTGGCGGTACATTACTTCATCCGCAAATGTGGCTGGAGTCACGCATTC  >  NC_000913_3_vch_pgi/3483901‑3484183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.