New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	= 3484043	14 (0.630)	4 (0.190)	4/274	2.5	23.2%	coding (842/1023 nt)	yheT	UPF0017 family putative hydrolase
	?	NC_000913_3_vch_pgi	= 3484049	13 (0.610)					coding (848/1023 nt)	yheT	UPF0017 family putative hydrolase

CGCATCCGTGAATTTGACGATCTCATCACCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATGGCGGTCATGTTGGCTTTATTGGCGGTACATTACTTCATCCGCAAATGTGGCTGGAGTCACGCATTC  >  NC_000913_3_vch_pgi/3483901‑3484183                                                                                                                                                     |                                                                                                                                       cGCATCCGTGAATTTGACGATCTCATCACCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTAt                                                                                                                                        <  1:110933/149‑1 (MQ=255)                   gATCTCATCACCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATccc                                                                                                                      >  1:196694/1‑149 (MQ=255)                      ctcATCACCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGaa                                                                                                                   >  1:109617/1‑149 (MQ=255)                         atcaCCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAAcc                                                                                                                >  2:312695/1‑149 (MQ=255)                              cGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGaaa                                                                                                           >  1:366923/1‑149 (MQ=255)                                                                       gTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCACCGCAGGGGGAGTATCAACTGACTAAACATGGc                                                                  >  2:325182/1‑149 (MQ=255)                                                                                          gATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATg                                                                    <  1:284119/128‑1 (MQ=255)                                                                                          gATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATg                                                                    >  2:284119/1‑128 (MQ=255)                                                                                             gCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGGCTCCCCCCGCCGGTGGAGTATCAACTGGCTGAACATGGCGGTCATGTTGGCTTTATTGGCg                                            <  2:21650/149‑1 (MQ=255)                                                                                                                ccGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATGGCGGTCATGTTGGCTTTATTGGCGGTACATTACTTCATCCGCa                         <  1:165501/149‑1 (MQ=255)                                                                                                                 cGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATGGCGGTCATGTTGGCTTTATTGGCGGTACATTACTTCATCCGCaa                        >  1:263492/1‑149 (MQ=255)                                                                                                                                aCGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAactgact                                                                           >  1:32191/1‑83 (MQ=255)                                                                                                                                aCGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAactgact                                                                           <  2:32191/83‑1 (MQ=255)                                                                                                                                       agagGATTCGTTGATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATGCCGGTCCTGTTGGCTTTATTGGCGGTACATTACTTCATCCGCAAATGTGGCTGGAGTCACGCATTc  <  1:112150/149‑1 (MQ=255)                                                                                                                                       aGACGATCCGTTTATggatcgtctttggcgtgaataatcagcgtcggtttggcgatccggt                                                                                          <  2:114523‑M2/61‑47 (MQ=255)                                                                                                                                       aGACGATCCGTTTATggatcgtctttggcgtgaataatcagcgtcggtttggcgatccggt                                                                                          >  1:114523‑M2/1‑15 (MQ=255)                                                                                                                                         aCGATCCGTTTATggatcgtctttggcgtgaataatcagcgtcggtttggcgatccggttcagcatcggcatggcgctacactgacgataatagtcgatagcgtcggcgtagccgtgaattctggcggtgatgagatc           <  1:290746‑M2/138‑126 (MQ=255)                                                                                                                                         aCGATCCGTTTATggatcgtctttggcgtgaataatcagcgtcggtttggcgatccggttcagcatcggcatggcgctacactgacgataatagtcgatagcgtcggcgtagccgtgaattctggcggtgatgagatc           >  2:290746‑M2/1‑13 (MQ=255)                                                                                                                                                     |                                                                                                                                       CGCATCCGTGAATTTGACGATCTCATCACCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCGATGCTGAACCGGATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCGAAACCGGAAAGTCTCCCCCCGCAGGTGGAGTATCAACTGACTGAACATGGCGGTCATGTTGGCTTTATTGGCGGTACATTACTTCATCCGCAAATGTGGCTGGAGTCACGCATTC  >  NC_000913_3_vch_pgi/3483901‑3484183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.