New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	= 1075237	23 (1.050)	3 (0.140)	3/284	3.0	13.2%	coding (3646/3963 nt)	putA	fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
	?	NC_000913_3_vch_pgi	= 1075270	17 (0.790)					coding (3613/3963 nt)	putA	fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
Rejected: Frequency below/above cutoff threshold.

CGAATCACCGTGGAAGATCACCGCATCAAACGGTTGAGCGGTTATATTTTCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCGGCAGCAATCGTTGTGTTCCTGCCTGCG  >  NC_000913_3_vch_pgi/1075097‑1075383                                                                                                                                             |                                                                                                                                                   cGAATCACCATGGAAGATCACCGCATCAAACGGTTGAGCGGTTATATTTTACGCTTTCGCCAGTTGAATACGTTAGCTGACTGCCAATCGCAATGCCTTCACTAACTGACGGTGCACCGCGTCATCCGGCCACACTACCTGactgacca                                                                                                                                            >  2:202434‑M1/1‑141 (MQ=255)       aCCGTGGAAGATCACCGCATCAAACGGTTGAGCGGTTATATTTTCCGCTTTCGCCAGTTGAATACGTTCGCTGCCTGCCGATGCCAATGCCCTCACTAACTGACCATCCAGCGCGTCGTCCGGCCACAGAACCTCGCTGCCGACCGccc                                                                                                                                      >  2:58108/1‑148 (MQ=255)          gTGGAAGATCACCGCATCAAACGGTTGAGCGGTTATATTTTCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTACCTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCCGCa                                                                                                                                   >  1:131354/1‑149 (MQ=255)           tGGAAGATCACCGCATCAAACGGTTGAGCGGTTATATTTTCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCAc                                                                                                                                  >  1:276672/1‑149 (MQ=255)            ggAAGATCACCGCATCAAACGGTTGAGCGGTTATATTTTCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCAcg                                                                                                                                 >  1:21107/1‑149 (MQ=255)                 aTCACCGCATCAAACGGTTGAGCGGTTATATTTTCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCCCCGCCAGCCCggcggc                                                                                                                            >  2:17035/1‑149 (MQ=255)                 aTCACCGCATCAAACGGTTGAGCGGTTATATTTTCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCCCCGCCAGCACcgcggc                                                                                                                            >  2:17094/1‑149 (MQ=255)                 aTCACCGCATCAAACGGTTGAGCGGTTATATTTTCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACggcggc                                                                                                                            >  2:13531/1‑149 (MQ=255)                                         gTTATATTTTCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCtc                                                                                                    <  1:61677/149‑1 (MQ=255)                                                tttCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGTGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCg                                                                                             >  1:333910/1‑149 (MQ=255)                                                      cTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATa                                                                                       <  2:108793/149‑1 (MQ=255)                                                                           cGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGgc                                                                  <  1:175909/149‑1 (MQ=255)                                                                            cataaCTCCCGATGGCAATGCCTTCACTACCTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCTCCAGCACGGCGGAGAGTTGAGTCAGCTCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGgca                                                                 <  1:178130/145‑1 (MQ=255)                                                                                    ccGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCCGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACCACACGCGCGCACGTGGCACCAGCgcc                                                         >  2:103339/1‑147 (MQ=255)                                                                                      gATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCa                                                       <  2:342085/149‑1 (MQ=255)                                                                                        tGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCCTCATCGGCAATCCCCAACACGCGCTCACGCGGCGCCAGCGTCCAgg                                                     >  2:348046/1‑149 (MQ=255)                                                                                                  ttCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCgg                                                                                            >  1:108703/1‑100 (MQ=255)                                                                                                  ttCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCgg                                                                                            <  2:108703/100‑1 (MQ=255)                                                                                                           tGACGATGCAGCGCGTCATCCGGCCACAGTACCTGactcagctcgccgccgtgctggcggtgggcagccaggtactgtggc                                                                                                      <  1:279915‑M1/81‑47 (MQ=255)                                                                                                           tGACGATGCAGCGCGTCATCCGGCCACAGTACCTGactcagctcgccgccgtgctggcggtgggcagccaggtactgtggc                                                                                                      >  2:279915‑M1/1‑35 (MQ=255)                                                                                                                ctGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCg                             <  2:196578/148‑1 (MQ=255)                                                                                                                 tGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCgg                            >  1:187252/1‑149 (MQ=255)                                                                                                                   cAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCGgca                          <  1:17936/149‑1 (MQ=255)                                                                                                                                 gCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTcaggtactgtggccggatgacgcgctgcatcgtca                                                                                <  1:279915‑M2/81‑36 (MQ=255)                                                                                                                                 gCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTcaggtactgtggccggatgacgcgctgcatcgtca                                                                                >  2:279915‑M2/1‑46 (MQ=255)                                                                                                                                    acaGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCGGCAGCAATCGTTGTGTTcct         >  1:17920/1‑149 (MQ=255)                                                                                                                                       gTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCGGCGGCAATCGTTGTGTTcctgcc      >  1:55496/1‑149 (MQ=255)                                                                                                                                           cTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCGGCAGCAATCGTTGTGTTCCTGCCTgcg  >  1:182276/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                   CGAATCACCGTGGAAGATCACCGCATCAAACGGTTGAGCGGTTATATTTTCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCGGCAGCAATCGTTGTGTTCCTGCCTGCG  >  NC_000913_3_vch_pgi/1075097‑1075383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.