New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	= 1075237	23 (1.050)	3 (0.140)	3/284	3.0	13.2%	coding (3646/3963 nt)	putA	fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
	?	NC_000913_3_vch_pgi	= 1075270	17 (0.790)					coding (3613/3963 nt)	putA	fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
Rejected: Frequency below/above cutoff threshold.

GTTATATTTTCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCGGCAGCAATCGTTGTGTTCCTGCCTGCGCCAGCTCGCCATATTGCGTACATAACGC  >  NC_000913_3_vch_pgi/1075137‑1075411                                                                                                                                      |                                                                                                                                              gTTATATTTTCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCtc                                                                                                                                <  1:61677/149‑1 (MQ=255)        tttCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGTGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCg                                                                                                                         >  1:333910/1‑149 (MQ=255)              cTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATa                                                                                                                   <  2:108793/149‑1 (MQ=255)                                   cGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGgc                                                                                              <  1:175909/149‑1 (MQ=255)                                    cataaCTCCCGATGGCAATGCCTTCACTACCTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCTCCAGCACGGCGGAGAGTTGAGTCAGCTCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGgca                                                                                             <  1:178130/145‑1 (MQ=255)                                            ccGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCCGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACCACACGCGCGCACGTGGCACCAGCgcc                                                                                     >  2:103339/1‑147 (MQ=255)                                              gATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCa                                                                                   <  2:342085/149‑1 (MQ=255)                                                tGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCCTCATCGGCAATCCCCAACACGCGCTCACGCGGCGCCAGCGTCCAgg                                                                                 >  2:348046/1‑149 (MQ=255)                                                          ttCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCgg                                                                                                                        <  2:108703/100‑1 (MQ=255)                                                          ttCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCgg                                                                                                                        >  1:108703/1‑100 (MQ=255)                                                                        ctGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCg                                                         <  2:196578/148‑1 (MQ=255)                                                                         tGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCgg                                                        >  1:187252/1‑149 (MQ=255)                                                                           cAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCGgca                                                      <  1:17936/149‑1 (MQ=255)                                                                                         gCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTcaggtactgtggccggatgacgcgctgcatcgtca                                                                                                            <  1:279915‑M2/81‑36 (MQ=255)                                                                                         gCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTcaggtactgtggccggatgacgcgctgcatcgtca                                                                                                            >  2:279915‑M2/1‑46 (MQ=255)                                                                                            acaGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCGGCAGCAATCGTTGTGTTcct                                     >  1:17920/1‑149 (MQ=255)                                                                                               gTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCGGCGGCAATCGTTGTGTTcctgcc                                  >  1:55496/1‑149 (MQ=255)                                                                                                   cTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCGGCAGCAATCGTTGTGTTCCTGCCTgcg                              >  1:182276/1‑149 (MQ=255)                                                                                                             aCCGCCAGCACGGTGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACATGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCGGCAGCAATCGTTGTGTTCCTGCCTGCGCCAGCTCGcc                    <  2:333910/149‑1 (MQ=255)                                                                                                                               tggtcagtcaggtagtgtggccggatgacgcggtgcaccgtcagttagtgaaggcattgcgattggcagtcagctaacgtattcaactggcgaaagcgtaaaatataaccgctcaaccgtttgatgcggtgatcttccatggtgattcg  >  2:202434‑M2/6‑8 (MQ=255)                                                                                                                                      |                                                                                                                                              GTTATATTTTCCGCTTTCGCCAGTTGAATACGTTCGCTGACTGCCGATGGCAATGCCTTCACTAACTGACGATGCAGCGCGTCATCCGGCCACAGTACCTGGCTGCCCACCGCCAGCACGGCGGCGAGCTGAGTCAGCGCATCCTGCTCATCATCGGCAATACACAACACGCGCTCACGCGGCAGCAGCGTCCAGGTGTTGCGTTCACCCGTCGGCCCCGGCAGCAATCGTTGTGTTCCTGCCTGCGCCAGCTCGCCATATTGCGTACATAACGC  >  NC_000913_3_vch_pgi/1075137‑1075411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.