| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 2837465 = | NA (NA) | 3 (0.140) | 3/274 | 2.9 | NA | noncoding (1/27 nt) | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_vch_pgi | 2837492 = | NA (NA) | intergenic (‑67/+86) | hypF/hydN | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit | |||||
GAAGATTTAATTGCTGTGCCAGCTGCCAGACAAACGGACGAAAACCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCAGCGCCGTACGGC > NC_000913_3_vch_pgi/2837320‑2837600 | gtaataaacttgaacaactgagcgcagaaaaacgccgccgtacggcgctgatgttctaaaaatcttacagaactgttctggcatcaaaggaattcccggaaatattcgtagaatacggagcgggcggtatcgccgacctgtgactGCCg > 2:225168‑M1/146‑149 (MQ=255)gAAGATTTAATTGCTGTGCCAGCTGCCAGACAAACGGACGCAAACCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCg > 1:112162/1‑149 (MQ=255)gAAGATTTAATTGCTGTGCCAGCTGCCAGACAAACGGACGAAAACCGACGCCCTGCCGATCTGGACGTATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCg < 1:186514/149‑1 (MQ=255) ttGCTGTGCCAGCTGCCAGACAAACGGACGAAAACCGACGCCCTGCACTTTGCAACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGCATTGCGTAACCCGCCCTGCCGGACCCGaacg > 1:255743/1‑146 (MQ=255) tGCTGTGCCAGCTGCCAGACAAACGGACGAAAACCGACGCCCTGCACTTTGCCACGAATACGCAGGTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTCTTCCCGCCATCATGCATTTCTTAACCCGCCCTGCCTGACACGACAGc > 2:92877/1‑149 (MQ=255) gCTGTGCCAGCTGCCAGACAAACGGACGAAAACCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTATTTCAGTTTGGTGTTCCCGCCATCATGAATTGCGTAACCCACCCTGCCGGACACGACAGCg > 2:235847/1‑149 (MQ=255) aactgagcgcagaaaaacgccgccgtacggcgctgatgttctaaaaatcttacagaactgttctggcatccaaggaattcccggaaatattcgtagaatacggagcgggcggtatcgccgacctgcgaatACCAGACACGACGGTGTCg < 2:60619‑M1/19‑1 (MQ=255) agCCAGCTGCCAGACAAACGGGGGAAAACCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTGTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGc < 2:88363/148‑1 (MQ=255) gCTGCCGGACAAACGGACGAAAAGCGCCGCGCTGCACTTTGCCACGAACACGCAGTTGGGCACGGCAAGATGTGTTTTTTGCCATTGAGCTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCg < 2:308510/149‑1 (MQ=255) ccAGACAAACGGACGAAAACCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCTTTGAGTTATTCCCGGCATGCTGTATTGCGTAACTCGCGCTGCCGGACACGACAGCGTTGCATCCGGcgg > 2:33550/1‑147 (MQ=255) aCAAACGGACGAAAACCGACGCCCTGCACTTTGCCACGAATACGCACTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGCCCCCGTCGCGTCCGCCCGTcac > 2:131567/1‑149 (MQ=255) aaaGGGACGAAAACCGACGCCGTGCACTTTGCCACGAATACGAAGTTGGACACCGCAAGATGGGTTTTTTGCCATTGGGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAg < 2:217899/149‑1 (MQ=255) ttGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGCATTGCGTAACCCTCCCTGCCGGACACGACACCGTCGCATCCGACAGTCACAAGTCGGCACTACCGCCCGCTCCgccatct > 2:96210/1‑143 (MQ=255) ttGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGCTACCGCCCGCTCCCTATTCt > 2:262870/1‑149 (MQ=255) ccACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCCTGAATTGCGTAACCCGCCCTGCCGCACACGACAGCGTCGCATCCGGCAGTCGCACGCCGGCGCTACCGCCCCCTCCGTATTCTACg > 2:309209/1‑149 (MQ=255) aCGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGaa > 1:303516/1‑149 (MQ=255) gagggtGGGCAGCGCAGGATGTGTTTTTTGCCAGTGCTTCGATCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCg < 2:243609/144‑1 (MQ=255) tggcatcaaaggaattcccggaaatattcgtagaatacggagcgggcggtatcgccgacctgtgactGCCGGACACGACAGCGTCGCATCCgg < 2:348619‑M1/26‑1 (MQ=255) tggcatcaaaggaattcccggaaatattcgtagaatacggagcgggcggtatcgccgacctgtgactGCCGGACACGACAGCGTCGCATCCgg > 1:348619‑M1/68‑93 (MQ=255) aGATGTGATATTTGACATTGAGTTAATTTCGCCAGCATGAATTGCGTAACCTGCCCTGCCGTGCACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCGGGAATTCCTTTGATGc < 2:269923/149‑1 (MQ=255) gtgtTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGCCACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGCATATCTCCGGGAATTCCTTGGCTGCCAGa > 2:347531/1‑149 (MQ=255) ttcgCCATGCAGTTAACCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCGGGAATTCCTTTGACGCCAGAACAGtt < 2:236851/146‑1 (MQ=255) cGTAACCCGCCCTGCGGGACACGACAGCGTCGCATCCGGCAGTAACAGGTCGGCGATACCGCCCGCCACCTATTCTACGAATATTTCCGGGAACTCCTTTGATGCCAGAACAGATCTGTAAGATTGTTCGAACGTCAGCGCCGTAcggc > 2:318858/1‑149 (MQ=255) | GAAGATTTAATTGCTGTGCCAGCTGCCAGACAAACGGACGAAAACCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCAGCGCCGTACGGC > NC_000913_3_vch_pgi/2837320‑2837600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |