New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	2837465 =	NA (NA)	3 (0.140)	3/274	2.9	NA	noncoding (1/27 nt)	REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_vch_pgi	2837492 =	NA (NA)					intergenic (‑67/+86)	hypF/hydN	carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit

ACAAACGGACGAAAACCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCAGCGCCGTACGGCGGCGTTTTTCTGCGCTCAGTTGTTCAAGTTTATTAC  >  NC_000913_3_vch_pgi/2837349‑2837636                                                                                                                                                |                                                                                                                                                 aCAAACGGACGAAAACCGACGCCCTGCACTTTGCCACGAATACGCACTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGCCCCCGTCGCGTCCGCCCGTcac                                                                                                                                             >  2:131567/1‑149 (MQ=255)   aaaGGGACGAAAACCGACGCCGTGCACTTTGCCACGAATACGAAGTTGGACACCGCAAGATGGGTTTTTTGCCATTGGGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAg                                                                                                                                           <  2:217899/149‑1 (MQ=255)                               ttGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGCATTGCGTAACCCTCCCTGCCGGACACGACACCGTCGCATCCGACAGTCACAAGTCGGCACTACCGCCCGCTCCgccatct                                                                                                               >  2:96210/1‑143 (MQ=255)                               ttGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGCTACCGCCCGCTCCCTATTCt                                                                                                               >  2:262870/1‑149 (MQ=255)                                  ccACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCCTGAATTGCGTAACCCGCCCTGCCGCACACGACAGCGTCGCATCCGGCAGTCGCACGCCGGCGCTACCGCCCCCTCCGTATTCTACg                                                                                                            >  2:309209/1‑149 (MQ=255)                                    aCGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGaa                                                                                                          >  1:303516/1‑149 (MQ=255)                                            gagggtGGGCAGCGCAGGATGTGTTTTTTGCCAGTGCTTCGATCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCg                                                                                                  <  2:243609/144‑1 (MQ=255)                                                            aGATGTGATATTTGACATTGAGTTAATTTCGCCAGCATGAATTGCGTAACCTGCCCTGCCGTGCACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCGGGAATTCCTTTGATGc                                                                                  <  2:269923/149‑1 (MQ=255)                                                                gtgtTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGCCACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGCATATCTCCGGGAATTCCTTGGCTGCCAGa                                                                              >  2:347531/1‑149 (MQ=255)                                                                      ttcgCCATGCAGTTAACCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCGGGAATTCCTTTGACGCCAGAACAGtt                                                                        <  2:236851/146‑1 (MQ=255)                                                                                                        cGTAACCCGCCCTGCGGGACACGACAGCGTCGCATCCGGCAGTAACAGGTCGGCGATACCGCCCGCCACCTATTCTACGAATATTTCCGGGAACTCCTTTGATGCCAGAACAGATCTGTAAGATTGTTCGAACGTCAGCGCCGTAcggc                                      >  2:318858/1‑149 (MQ=255)                                                                                                                      ccggatgcgacgctgtcgtgtccggcAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCGGGAATTCCTTTGATGCCa                                                                                >  1:348619‑M2/27‑93 (MQ=255)                                                                                                                      ccggatgcgacgctgtcgtgtccggcAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCGGGAATTCCTTTGATGCCa                                                                                <  2:348619‑M2/67‑1 (MQ=255)                                                                                                                             cgacaccgtcgtgtctggtATTCGCAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCGGGAATTCCTTGGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCAGCGCCGTACGGCGGCGTTTTTCTGCGCTCAgtt                 <  2:60619‑M2/130‑1 (MQ=255)                                                                                                                                      cGCAGCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCGGGAATTCCTTTGATGCCAGAACAGTTCTGCAAGATTTTTAGAACATCAGCGCCGTACGGCGGCGTTTTTCTGCGCTCAGTTGTTCAAGtt        <  1:248346/149‑1 (MQ=255)                                                                                                                                            cggcAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCAGCGCCGTACGGCGGCGTTTTTCTGCGCTCAGTTGTTCAAGTTTATTAc  >  2:225168‑M2/5‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                 ACAAACGGACGAAAACCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGACACGACAGCGTCGCATCCGGCAGTCACAGGTCGGCGATACCGCCCGCTCCGTATTCTACGAATATTTCCGGGAATTCCTTTGATGCCAGAACAGTTCTGTAAGATTTTTAGAACATCAGCGCCGTACGGCGGCGTTTTTCTGCGCTCAGTTGTTCAAGTTTATTAC  >  NC_000913_3_vch_pgi/2837349‑2837636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.