| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 3426803 | NA (NA) | 5 (0.320) +TTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCAC |
3/208 | 2.2 | 17.0% | intergenic (‑20/+155) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala |
| ? | NC_000913_3_vch_pgi | 4168562 = | 34 (1.550) | intergenic (+115/‑79) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTACCGACGCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCAC > NC_000913_3_vch_pgi/3426699‑3426949 | cTTACCGACGCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCg > 1:40097/1‑149 (MQ=11) aCCGACGCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCgttg < 2:253919/149‑1 (MQ=32) gCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACATCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAgt > 2:241977/1‑149 (MQ=17) aTCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGttt < 1:248015/149‑1 (MQ=32) gCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATACACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAATTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCaa > 1:207394/1‑149 (MQ=17) aTCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCAGAAGATGTTTCACTTCAGGGTTGCGAAAATTTGAGAGAATCCCGAACAACTTTCGTGGTTCCGTGTTACAATTTTCCGCTTCATGCCGAt > 1:177162/1‑149 (MQ=11) ctctGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTa > 1:221743/1‑149 (MQ=32) gCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTc > 1:5228/1‑149 (MQ=37) cATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTcc > 1:201419/1‑148 (MQ=37) ccGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGa > 1:370272/1‑149 (MQ=255) ccGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGAAACCGCTAGAGAGGGTCACCAGTAACGTGCGTTGTTCAGTGATTCAATGTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGa > 1:187899/1‑149 (MQ=14) gtgtACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTAAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCGGTGAAc > 1:376284/1‑149 (MQ=255) gtAGTCGGTTAAGCGCAAAACGCGAAGATGTTTCATTTGAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAg < 2:363645/148‑1 (MQ=14) tCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTac > 1:39783/1‑149 (MQ=255) ccTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGaa < 1:173711/149‑1 (MQ=255) ccTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGaa < 1:190592/149‑1 (MQ=255) tGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAAt < 2:165431/149‑1 (MQ=40) ttCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCAc < 1:279277/149‑1 (MQ=38) | CTTACCGACGCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCAC > NC_000913_3_vch_pgi/3426699‑3426949 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |