New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	= 3426803	NA (NA)	5 (0.320) +TTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCAC	3/208	2.2	17.0%	intergenic (‑20/+155)	rrlD/alaU	23S ribosomal RNA of rrnD operon/tRNA‑Ala
	?	NC_000913_3_vch_pgi	4168562 =	34 (1.550)					intergenic (+115/‑79)	gltT/rrlB	tRNA‑Glu/23S ribosomal RNA of rrnB operon
Rejected: Frequency below/above cutoff threshold.

GGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGC  >  NC_000913_3_vch_pgi/4168414‑4168709                                                                                                                                                     |                                                                                                                                                    accttaccgacgcttatcgcagattagcacgtccttcatcgcctctgactgccagggcatccaccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacg                                                                                                                                                     >  1:112652‑M2/149‑149 (MQ=255)  ccctaccgacgcttatcgcagattagcacgtccttcatcgcctctgactgccagggcatccaccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGa                                                                                                                                                    <  1:6475‑M2/2‑1 (MQ=255)   tAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGaa                                                                                                                                                   >  2:169712/1‑149 (MQ=38)   tAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGCGTGCCGTTGGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGaa                                                                                                                                                   <  1:269373/149‑1 (MQ=255)      cAGGGGGTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGaacaa                                                                                                                                                <  2:343838/149‑1 (MQ=37)      accgacgcttatcgtagattagcacgtccttcatcgcctctgactgccagggcatccaccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGaacaa                                                                                                                                                <  2:156704‑M2/6‑1 (MQ=255)        ggggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACg                                                                                                                                              >  1:35707/1‑149 (MQ=37)          ggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACgag                                                                                                                                            <  1:232130/149‑1 (MQ=38)           gTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTGATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACgagg                                                                                                                                           >  1:65356/1‑148 (MQ=38)           gTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCAACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACgaga                                                                                                                                           <  2:373151/149‑1 (MQ=25)                  tCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTc                                                                                                                                    >  1:297000/1‑149 (MQ=255)                    cgttAGGGGACGCCACGTGTTGGATTGTGAGGGAAAGTCGCCGACCTGAATATCTCAAAACGCATCTTCGGGTGAGGTGTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACGCGGAACAACGAGAGTTGTGCGt                                                                                                                                  <  2:261186/146‑1 (MQ=14)                     ccTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAATCACTGAACAACGAGAGTTGTTCGTg                                                                                                                                 >  1:382593/1‑149 (MQ=255)                        aGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGt                                                                                                                              >  2:38722/1‑149 (MQ=255)                               gCCAGTTGCTGGTTTGTGAGTGAAAGTCGCCGGCTTTAATATCTGAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACGCCGAGAGTTGTCCGTGAGTCCGTCaa                                                                                                                       >  2:149076/1‑149 (MQ=11)                                 cACTTGCTGGTTTGTGAGTGAAAGTCGCCGACTTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAAt                                                                                                                     >  2:15676/1‑149 (MQ=255)                                       tcgcctctgactgccagggcatccaccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGc                                                                                                               >  1:262319‑M2/111‑149 (MQ=255)                                                      agggcatccaccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAAt                                                                                                <  2:262319‑M2/54‑1 (MQ=255)                                                       aGTCGCCGACCTTAATATCTCAAAACGCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc                                                                                               <  2:306043/149‑1 (MQ=255)                                                            ccGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTACTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCACATTTTCGCAAGCCGATGATGAATCaaaag                                                                                          >  1:158083/1‑149 (MQ=11)                                                            ccGACCTTAATATCTCAAAACTCATCTTCGGGTGATGCTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaag                                                                                          >  2:373078/1‑149 (MQ=25)                                                                          tcAAAACTCATCTTCGGGTTATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGCGTTGTTCGTGAGTCCCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGt                                                                            <  1:341812/149‑1 (MQ=12)                                                                            aaaaCTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTtg                                                                          >  2:357441/1‑149 (MQ=32)                                                                                cTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAg                                                                      <  1:335832/149‑1 (MQ=32)                                                                                cTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAg                                                                      <  2:309149/149‑1 (MQ=32)                                                                                cTCATCTTCGGGTGATGTTTGAGATATCTGCCCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGCGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAg                                                                      <  1:301566/149‑1 (MQ=12)                                                                                      ttggggTGATGTTTGAGATATTCGCTCTTTAAAAATCCGGATAAATCAGAAAATGGAAACACTGAACAACGAGAGTTGTTCGTGTGTCTCTCAAATTTTCGCAACACGATGATGAAGCGAAAGAAACATCTTCGGGTTGTGAGGTTAAg                                                                <  1:72874/146‑1 (MQ=11)                                                                                       tCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAAGAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTGGGGTTTTAAGGTTAAGc                                                               >  2:19300/1‑149 (MQ=255)                                                                                         gggTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGa                                                             <  2:302042/149‑1 (MQ=32)                                                                                                                 tttAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACCCGATGATGAATCGGAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACAAGGTGGATGCCCt                                     >  1:332387/1‑149 (MQ=12)                                                                                                                 tttAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTATCAAATTTTAGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTTTAAGGTTAAGCGACTAAGCGTAGACGGGGGATGCCCt                                     >  1:332452/1‑149 (MQ=11)                                                                                                                  tgaaaaaTCTGGATCAAGCGGAAAAGTGAAACACTGAACGACGAGGGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGGAAGAAACCTCGTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTg                                    <  2:73324/147‑1 (MQ=11)                                                                                                                       aaTCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGt                               <  1:15676/149‑1 (MQ=32)                                                                                                                       aaTCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGt                               <  2:204115/149‑1 (MQ=32)                                                                                                                                cAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGa                      <  2:142428/149‑1 (MQ=32)                                                                                                                                cAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTCTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGa                      <  1:236037/149‑1 (MQ=17)                                                                                                                                    cTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGaa                  <  2:77358/149‑1 (MQ=32)                                                                                                                                               aaCACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTaa       <  1:230349/149‑1 (MQ=32)                                                                                                                                                    tGAACAACGAGAGTTGTTCGTGAGGCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGc  <  1:311101/149‑1 (MQ=17)                                                                                                                                                     |                                                                                                                                                    GGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGC  >  NC_000913_3_vch_pgi/4168414‑4168709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.