| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913_3_vch_pgi | 2,393,422 | Δ13 bp | coding (1613‑1625/1842 nt) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 2393421 | 1 (0.050) | 15 (0.690) | 15/288 | 0.5 | 93.8% | coding (1626/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| ? | NC_000913_3_vch_pgi | 2393435 = | 1 (0.050) | coding (1612/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L | |||||
CTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTCAACATGCTG > NC_000913_3_vch_pgi/2393309‑2393583 | agcagacctttacctgcaaagcgggaaaggacagccgggatgttcatcatggagttaagcggagcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacacgtagccatcaagccagCGTTGTACCACCACGCCCCcagc > 2:323576‑M2/127‑149 (MQ=255) tttacctgcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCCGACGGcc < 1:81696‑M2/31‑1 (MQ=255) gctggaaaggacagccgggatgttcatcagtgagttcagcggttcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGtt < 2:147327‑M2/43‑1 (MQ=255) gggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccatgcaatacccaggaagggcgtgacgaacactgtgtcatacacccagCGTTGTACCACCAGGTGCCCAGCAGGCGGCCCGGCGCACTGTTgg < 2:259427‑M2/45‑1 (MQ=255) aggaaagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATg < 2:178118‑M2/50‑1 (MQ=255) gacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactgtgtcatacagcccgCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGa < 1:256020‑M2/52‑1 (MQ=255) ttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggcacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTa > 1:251951‑M2/85‑149 (MQ=255) gtgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTAc < 1:346107‑M2/72‑1 (MQ=255) ttCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAG‑‑‑‑‑‑‑‑‑‑‑CCC‑‑GCGTTGTACCACCAGGTGCCCAGCAGACCGCCCAGCGAACTGTAGGCGATGGAGAGCACCCGAAGACGCTCACCCAGCCACACCCCGgccgcc > 2:158718/1‑149 (MQ=255) tttcagcaaccgggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGGACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGc < 2:43791‑M2/91‑1 (MQ=255) tttcagcaaccaggcaatacccaggaacggcttgacgaaccctttgtcatacagccagCGTTGGCCCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGCTGGAGGTCACCAGAGCACGATTCCGCAGCCACCCCCACgctcc > 2:380132‑M2/59‑147 (MQ=255) ccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCACAGCAGACGGCCCGGAGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACcg > 1:85008‑M2/39‑149 (MQ=255) ttggcgaacactttgtcatacagcctgCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCGGCCACAGCCAGGCTGTCAGCGGTATGCCGACCACCGCGACCACGCCa < 2:361205‑M2/122‑1 (MQ=255) gaagaacactctgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTATTGGCGATGGAGGTCACCAGAGGACGTTTACCCAGCCACAGCCACGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCaga < 2:18602‑M2/124‑1 (MQ=255) tcatacagccagCGTTTTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGTCTGCCAACAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAgg < 2:164341‑M2/137‑1 (MQ=255) gccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGGTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCGGCGGTAATTTCCAGGGTCAACa > 2:300393‑M2/6‑149 (MQ=255) cGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTCCCACCAGCATGCCGCCCACCGCGACCACGCCAGAGGTAATTTCCAGGGTAAACCtcctg > 1:79753/1‑149 (MQ=255) | CTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTCAACATGCTG > NC_000913_3_vch_pgi/2393309‑2393583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |