New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 2766337	42 (0.990)	5 (0.120)	5/272	5.3	11.0%	coding (420/1074 nt)	rnlA	CP4‑57 prophage; RNase LS
	?	NC_000913_3_hsa_tpiA	= 2766341	41 (1.010)					coding (424/1074 nt)	rnlA	CP4‑57 prophage; RNase LS
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGAAA  >  NC_000913_3_hsa_tpiA/2766189‑2766484                                                                                                                                                     |                                                                                                                                                    ccATCAATCCTGCTTAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATGAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCCTACCGTAGTGTGGaaa                                                                                                                                                     <  1:659657/149‑1 (MQ=255)   gtCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAGAat                                                                                                                                                   >  1:531528/2‑149 (MQ=255)    tCAATCCTGCTGAATGTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAatt                                                                                                                                                  >  1:73062/1‑149 (MQ=255)            gctgAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTccac                                                                                                                                          <  1:667547/149‑1 (MQ=255)                    tGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATCTAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATc                                                                                                                                  <  2:350206/149‑1 (MQ=255)                            tAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGaa                                                                                                                          <  2:757837/149‑1 (MQ=255)                                   ggTACTGAAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTTTCCGGACGATTTGACtg                                                                                                                   >  2:578222/1‑149 (MQ=255)                                    gTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACtgt                                                                                                                  <  2:679089/149‑1 (MQ=255)                                        tGCAAGGATTTGTAGAGACAAGCGTTCTACATAGTCGTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGc                                                                                                              >  2:732317/1‑149 (MQ=255)                                          cAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATCGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGACACTTATTTCCACCAGCTTTCAGGACGGATTGACTGTGAGCCt                                                                                                            >  2:274990/1‑149 (MQ=255)                                                tttGTAGAGACAAGCGTTCAACCTGTACTTGAGCTACCACCACATGAATCGCACACAGGAACCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAACTATTTCCACCAGCTATCCGGACGAATTGACTGTGAGCCTGCatac                                                                                                      >  2:160295/1‑148 (MQ=255)                                                   gTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATcac                                                                                                   >  2:179076/1‑149 (MQ=255)                                                    tAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATcaca                                                                                                  >  1:722312/1‑149 (MQ=255)                                                       agaCAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCacaaca                                                                                               <  2:440286/149‑1 (MQ=255)                                                         aCAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACATCAgg                                                                                             >  2:204997/1‑149 (MQ=255)                                                                       tGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACATGTAAGCCCCAGCTTc                                                                               >  2:1173/1‑149 (MQ=255)                                                                          aCTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAgg                                                                            <  1:179076/149‑1 (MQ=255)                                                                          aCTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAgg                                                                            <  2:501370/149‑1 (MQ=255)                                                                           cTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAggg                                                                           >  1:533685/1‑149 (MQ=255)                                                                                    tCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCt                                                                  >  1:279075/1‑149 (MQ=255)                                                                                      agcagATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGt                                                                >  2:752038/1‑149 (MQ=255)                                                                                       gcagATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTc                                                               >  2:321129/1‑149 (MQ=255)                                                                                          gATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATg                                                            <  1:752038/149‑1 (MQ=255)                                                                                             gAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTa                                                         <  1:56750/149‑1 (MQ=255)                                                                                              actCGCATATAGAGTTCAGAAAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTCGCATGTTAc                                                        >  2:69993/3‑149 (MQ=255)                                                                                                tCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACag                                                      >  1:337619/1‑149 (MQ=255)                                                                                                 cGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACaga                                                     <  1:373517/149‑1 (MQ=255)                                                                                                 cGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACaga                                                     <  1:456724/149‑1 (MQ=255)                                                                                                        agagTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAGGCTCCAGATTCAGGGCCGACCGCTGTCCTGTTACAGAGATTTCa                                              >  1:412412/1‑149 (MQ=255)                                                                                                            ttCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACagag                                                    <  1:405608/139‑1 (MQ=255)                                                                                                            ttCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACagag                                                    >  2:405608/1‑139 (MQ=255)                                                                                                                      acTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCa                                <  2:73062/149‑1 (MQ=255)                                                                                                                         ctcGTAACGCGCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGcc                             <  2:74510/149‑1 (MQ=255)                                                                                                                            gTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTACATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTg                          >  1:616561/1‑149 (MQ=255)                                                                                                                            gTAACGCTCATACCGTAGTGTGGAAAATTATTTCCAACAGCTATCAGGACGAATTGACTGTGAGCCTGCGTATCACAACAGGTAAGCTCCCGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACGTGGCAGCCCTg                          >  1:28689/1‑149 (MQ=255)                                                                                                                                 gttCATAGCGTAGGTTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCACATCACAACCGGTAAGCTCCCGATTCAGGGCCGCCCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTCCTTGa                     <  2:389181/147‑1 (MQ=255)                                                                                                                                 gCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGa                                                                                  <  2:169647/88‑1 (MQ=255)                                                                                                                                 gCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGa                                                                                  >  1:169647/1‑88 (MQ=255)                                                                                                                                   tCATCCCGTAGTGGGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGAtt                   <  1:99136/149‑1 (MQ=255)                                                                                                                                       aCCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACa               <  2:337619/149‑1 (MQ=255)                                                                                                                                         cGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAgg             >  1:280087/1‑149 (MQ=255)                                                                                                                                         cGTAGTGTGGAAAATTATTTCCACAAGATATCTGTACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAgg             <  2:725088/149‑1 (MQ=255)                                                                                                                                                    aaaTTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGaaa  <  1:703492/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGAAA  >  NC_000913_3_hsa_tpiA/2766189‑2766484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.