New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 2766337	42 (0.990)	5 (0.120)	5/272	5.3	11.0%	coding (420/1074 nt)	rnlA	CP4‑57 prophage; RNase LS
	?	NC_000913_3_hsa_tpiA	= 2766341	41 (1.010)					coding (424/1074 nt)	rnlA	CP4‑57 prophage; RNase LS
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGAAAGTGC  >  NC_000913_3_hsa_tpiA/2766200‑2766488                                                                                                                                              |                                                                                                                                                    gctgAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTccac                                                                                                                                              <  1:667547/149‑1 (MQ=255)         tGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATCTAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATc                                                                                                                                      <  2:350206/149‑1 (MQ=255)                 tAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGaa                                                                                                                              <  2:757837/149‑1 (MQ=255)                        ggTACTGAAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTTTCCGGACGATTTGACtg                                                                                                                       >  2:578222/1‑149 (MQ=255)                         gTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACtgt                                                                                                                      <  2:679089/149‑1 (MQ=255)                             tGCAAGGATTTGTAGAGACAAGCGTTCTACATAGTCGTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGc                                                                                                                  >  2:732317/1‑149 (MQ=255)                               cAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATCGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGACACTTATTTCCACCAGCTTTCAGGACGGATTGACTGTGAGCCt                                                                                                                >  2:274990/1‑149 (MQ=255)                                     tttGTAGAGACAAGCGTTCAACCTGTACTTGAGCTACCACCACATGAATCGCACACAGGAACCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAACTATTTCCACCAGCTATCCGGACGAATTGACTGTGAGCCTGCatac                                                                                                          >  2:160295/1‑148 (MQ=255)                                        gTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATcac                                                                                                       >  2:179076/1‑149 (MQ=255)                                         tAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATcaca                                                                                                      >  1:722312/1‑149 (MQ=255)                                            agaCAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCacaaca                                                                                                   <  2:440286/149‑1 (MQ=255)                                              aCAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACATCAgg                                                                                                 >  2:204997/1‑149 (MQ=255)                                                            tGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACATGTAAGCCCCAGCTTc                                                                                   >  2:1173/1‑149 (MQ=255)                                                               aCTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAgg                                                                                <  2:501370/149‑1 (MQ=255)                                                               aCTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAgg                                                                                <  1:179076/149‑1 (MQ=255)                                                                cTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAggg                                                                               >  1:533685/1‑149 (MQ=255)                                                                         tCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCt                                                                      >  1:279075/1‑149 (MQ=255)                                                                           agcagATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGt                                                                    >  2:752038/1‑149 (MQ=255)                                                                            gcagATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTc                                                                   >  2:321129/1‑149 (MQ=255)                                                                               gATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATg                                                                <  1:752038/149‑1 (MQ=255)                                                                                  gAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTa                                                             <  1:56750/149‑1 (MQ=255)                                                                                   actCGCATATAGAGTTCAGAAAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTCGCATGTTAc                                                            >  2:69993/3‑149 (MQ=255)                                                                                     tCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACag                                                          >  1:337619/1‑149 (MQ=255)                                                                                      cGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACaga                                                         <  1:456724/149‑1 (MQ=255)                                                                                      cGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACaga                                                         <  1:373517/149‑1 (MQ=255)                                                                                             agagTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAGGCTCCAGATTCAGGGCCGACCGCTGTCCTGTTACAGAGATTTCa                                                  >  1:412412/1‑149 (MQ=255)                                                                                                 ttCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACagag                                                        <  1:405608/139‑1 (MQ=255)                                                                                                 ttCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACagag                                                        >  2:405608/1‑139 (MQ=255)                                                                                                           acTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCa                                    <  2:73062/149‑1 (MQ=255)                                                                                                              ctcGTAACGCGCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGcc                                 <  2:74510/149‑1 (MQ=255)                                                                                                                 gTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTACATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTg                              >  1:616561/1‑149 (MQ=255)                                                                                                                 gTAACGCTCATACCGTAGTGTGGAAAATTATTTCCAACAGCTATCAGGACGAATTGACTGTGAGCCTGCGTATCACAACAGGTAAGCTCCCGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACGTGGCAGCCCTg                              >  1:28689/1‑149 (MQ=255)                                                                                                                      gttCATAGCGTAGGTTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCACATCACAACCGGTAAGCTCCCGATTCAGGGCCGCCCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTCCTTGa                         <  2:389181/147‑1 (MQ=255)                                                                                                                      gCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGa                                                                                      <  2:169647/88‑1 (MQ=255)                                                                                                                      gCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGa                                                                                      >  1:169647/1‑88 (MQ=255)                                                                                                                        tCATCCCGTAGTGGGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGAtt                       <  1:99136/149‑1 (MQ=255)                                                                                                                            aCCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACa                   <  2:337619/149‑1 (MQ=255)                                                                                                                              cGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAgg                 >  1:280087/1‑149 (MQ=255)                                                                                                                              cGTAGTGTGGAAAATTATTTCCACAAGATATCTGTACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAgg                 <  2:725088/149‑1 (MQ=255)                                                                                                                                         aaaTTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGaaa      <  1:703492/149‑1 (MQ=255)                                                                                                                                             tattTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGAAAGTGc  <  1:179831/149‑1 (MQ=255)                                                                                                                                             tattTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGATTTCACGTTTAACTTGGACGCCCTGCTTGATTTAAAGGGTTTGGAGAAAggta  >  1:17080/1‑146 (MQ=255)                                                                                                                                              |                                                                                                                                                    GCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGAAAGTGC  >  NC_000913_3_hsa_tpiA/2766200‑2766488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.