New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 4148460NA (NA)10 (0.130) 8/264 8.9 NA noncoding (49/82 nt) REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913_3_hsa_tpiA = 4148493 NA (NA)noncoding (82/82 nt) REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 142 total aligned reads displayed.

ATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTT  >  NC_000913_3_hsa_tpiA/4148315‑4148608
                                                                                                                                                 |                                                                                                                                                    
aTGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGcc                                                                                                                                                   <  2:829699/149‑1 (MQ=255)
  gTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCgg                                                                                                                                                 >  2:778311/1‑149 (MQ=255)
  gTAGACGGGAAAACAGTAACTGGCATTATT‑AAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGa                                                                                                                                                <  2:881833/149‑1 (MQ=255)
   tAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGa                                                                                                                                                >  2:1040328/1‑149 (MQ=255)
    aGACGGGAAAACAGTACCTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAGCATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGAt                                                                                                                                               <  2:127906/149‑1 (MQ=255)
    aGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGATTACCGCCGCGATCTGTAGGCCGGAt                                                                                                                                               >  2:1364981/1‑149 (MQ=255)
     gACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCACCGCGATCTGTAGGACGGAtg                                                                                                                                              >  1:649912/1‑148 (MQ=255)
      aCGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATaa                                                                                                                                             <  2:1392086/149‑1 (MQ=255)
      aCGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATaa                                                                                                                                             >  1:1307198/1‑149 (MQ=255)
        gggAAAACAGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGGCGGATTTGGGGTAAACGCCTTATCCAGCCTCCCGCACGGATCTGTAGGCCGGATgaga                                                                                                                                           >  2:263206/1‑149 (MQ=255)
           aaaaCAGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAcgc                                                                                                                                        >  1:445688/1‑149 (MQ=255)
            aaaCAGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGCAGGCCGGATAAGAggcg                                                                                                                                       >  2:1161548/1‑149 (MQ=255)
             acatgTAATTTGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGt                                                                                                                                      <  1:1329198/145‑1 (MQ=255)
             aaCAGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGt                                                                                                                                      >  1:370777/1‑149 (MQ=255)
             aaCAGTAACTGGAATTATTAAAAAAGGCCACCGGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGt                                                                                                                                      <  1:1025355/149‑1 (MQ=255)
                aGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAg                                                                                                                                                      <  2:1257201/130‑1 (MQ=255)
                aGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCaa                                                                                                                                   >  2:377949/1‑149 (MQ=255)
                  tAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGc                                                                                                                                 >  1:660510/1‑149 (MQ=255)
                     cTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTc                                                                                                                              <  2:370777/149‑1 (MQ=255)
                     cTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTc                                                                                                                              <  2:1071206/149‑1 (MQ=255)
                      tGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCg                                                                                                                             >  2:29283/1‑149 (MQ=255)
                      tGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCg                                                                                                                             <  2:1091893/149‑1 (MQ=255)
                      tGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCg                                                                                                                             >  1:971712/1‑149 (MQ=255)
                      gggCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCg                                                                                                                             <  2:221566/148‑1 (MQ=255)
                        acATTATTAAAAAAAGCCACCTGAAAAGTGTGGCCTTAGAGTAGATCGATGTAAACATTGCGGCAGGTGTATTGCGGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAACGTCgaa                                                                                                                           >  2:708004/2‑147 (MQ=255)
                           ttattaAAAAAGGGCACCTGAAAAGTGTGGCCTGAGGGGATTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATcc                                                                                                                        <  1:31513/149‑1 (MQ=255)
                            atattaaaaaGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCg                                                                                                                       <  1:1031544/144‑1 (MQ=255)
                              ttaAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCAAGACTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGc                                                                                                                     >  1:1399796/1‑149 (MQ=255)
                               taAAAGAGGCCACCTGAAAGGTGTGGCCGGAGGGGAGGTCGATGTAAACATTGCGGCAGTTGTATTGCCGGTTGTGGCGCAAACGCCTTATCCGGTCTGCCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGGcc                                                                                                                    <  2:649912/149‑2 (MQ=255)
                                  aaaaGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAAt                                                                                                                 >  1:120096/1‑149 (MQ=255)
                                       gCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCCGTTGTATGGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAgcgc                                                                                                            <  1:1400513/149‑1 (MQ=255)
                                       gCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAgcgc                                                                                                            >  1:821797/1‑149 (MQ=255)
                                          aCCTGAAAAGTGTGGCCTGAGGGGGGTTCGATGTAAACATTGCGGCCGATCTATTGCCGGATGTTGCGTAAACGCCTTCTCCAGCCCACCGCCGCCATCTGTAGGCCGCATAAGACGCGTCAACCGCCCCACCCGCCCACTAGCGCCTg                                                                                                         >  2:429548/1‑149 (MQ=255)
                                          aCCTGAAAAGTGTGGCCTGAGGGGAGATCGCCGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGACGCGATCTGTAGGCCGGATAAGACGCGACAAGGGTCGCATGCGGGAAATAgcaactg                                                                                                         >  1:212139/1‑144 (MQ=255)
                                           ccTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTgg                                                                                                        <  1:1040328/149‑1 (MQ=255)
                                           ccTGAAAAGGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTgg                                                                                                        <  1:1081704/149‑1 (MQ=255)
                                                 aaGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTggat                                                                                                  <  2:205125/149‑4 (MQ=255)
                                                  aGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATaa                                                                                                 <  1:1314057/149‑1 (MQ=255)
                                                    tgtgGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCGAGCGTCGCATCCGGCCAATAGCGCCTGGCTGATAAtt                                                                                               >  2:112670/1‑149 (MQ=255)
                                                      tgGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTAc                                                                                             <  1:778311/149‑1 (MQ=255)
                                                      tgGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTAc                                                                                             <  2:445688/149‑1 (MQ=255)
                                                      tgGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCCCATCCGGCCAATAGCGCCTAGCTGATAAttca                                                                                             >  2:677206/1‑147 (MQ=255)
                                                      tgGACTGAGGGGAGTGCGAGGTAAACATTGCGGCAGTTGTATTGCCGGATGTGTCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTAc                                                                                             <  2:1290921/149‑1 (MQ=255)
                                                       tgCCTGAGGGGAGTTCGAGGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACt                                                                                            <  2:719545/148‑1 (MQ=255)
                                                        gCCTGAGGGGAGTTCGATGAAAACATTGCGGCAGTAGCATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTACGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTg                                                                                           >  2:1316921/1‑149 (MQ=255)
                                                         gcggacgggAGTTAGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCAGCGCTCTGTCGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGa                                                                                          <  1:324562/143‑1 (MQ=39)
                                                         ccTGAGGGGAGTTCGATGCAAACATTGCGGCAGTTGTATTGCCGGATATGGCGTAAACGCCTTATCCAGCCGACCGCCGTGATCTGTAGGCCGGATAAGACGCGTGAAGCGTCGCATCCGGCATATAGCGCCTGGCTGATAATTACTGa                                                                                          <  1:1092386/149‑1 (MQ=39)
                                                          cTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAGATAGCGCCTGGCTGATAATTACTGAt                                                                                         >  1:394802/1‑149 (MQ=255)
                                                          cTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGAt                                                                                         >  2:306467/1‑149 (MQ=255)
                                                           tGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGAtt                                                                                        >  2:652491/1‑149 (MQ=255)
                                                           tGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGAtt                                                                                        <  1:942356/149‑1 (MQ=255)
                                                            gAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTa                                                                                       <  2:884788/149‑1 (MQ=255)
                                                             aGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTAc                                                                                      <  2:974981/149‑1 (MQ=255)
                                                             aGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTAc                                                                                      <  1:377949/149‑1 (MQ=255)
                                                                ggAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGGCGGATCCGGCAAGAAGCGCCTGGCTGATAATTACTGATTACCCa                                                                                   >  1:1136117/1‑149 (MQ=255)
                                                                     tCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGa                                                                              <  2:660518/149‑1 (MQ=255)
                                                                      cGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAgcg                                                                                                             >  2:821859/1‑117 (MQ=255)
                                                                       gATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATACAGACCAACAGCACGATCTGTCGCCTTGATAGGACGCGTCAAGCGGCGAAGACTGCAAAGAGCGCCTGGCTCAGAATTACTGATTACCCACCTGATc                                                                            >  1:1407229/1‑149 (MQ=255)
                                                                        aTGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCg                                                                           <  2:971712/149‑1 (MQ=255)
                                                                           tAAACATTGCGGCGGTTGTATTAACCGAAGTGGCTGAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCCCCTGATCGccc                                                                        >  2:676713/1‑148 (MQ=38)
                                                                            aaaCATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAACACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTAGCCACCTGATCGCCAt                                                                       <  2:1177418/149‑1 (MQ=255)
                                                                               ctgtGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGTCGCGATCTGTAGGCAGGATAATACGCGTCACGCGGCGCATACGTTTAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAgt                                                                    <  2:1086622/146‑2 (MQ=255)
                                                                                aTTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAg                                                                                                                                                      <  1:1297568/66‑1 (MQ=255)
                                                                                aTTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTAATCGCCATAggg                                                                   >  1:904406/1‑149 (MQ=255)
                                                                                aTTGCGGCAGTTGTATTGCCGGATGTGGCATAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAg                                                                                                                                                      >  2:1297568/1‑66 (MQ=255)
                                                                                     ggCAGTTGTATTGCCGGATGTGGCGTAAACGCTTTACCCCGCGTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCCCTTGATCGCCATAGGGCtgtg                                                              <  2:1368891/149‑1 (MQ=38)
                                                                                      gCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgtgt                                                             >  1:581426/1‑149 (MQ=255)
                                                                                      gCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgtgt                                                             <  1:1312447/149‑1 (MQ=255)
                                                                                         gTTGTATTGCCGGTTGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTc                                                          <  2:20889/149‑1 (MQ=255)
                                                                                             tATTGGCGTATGGTGCTTAAAGCCCTTATTCAGCCTACCTCCGCGATCTGGAGGACGGATAACACTCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTAGTaa                                                      <  2:570965/149‑1 (MQ=255)
                                                                                             tATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgt                                                               >  2:642642/1‑140 (MQ=255)
                                                                                              aTTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAAt                                                     <  1:306467/149‑1 (MQ=255)
                                                                                               ttGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATc                                                    <  2:209838/149‑1 (MQ=255)
                                                                                                  ccGGATGTGGCGTAACCGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGAt                                                 <  1:824250/149‑1 (MQ=255)
                                                                                                  ccGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGAt                                                 <  1:760376/149‑1 (MQ=255)
                                                                                                    ggagctgGCGCAAACGCCTTACCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCa                                               <  1:913851/144‑1 (MQ=255)
                                                                                                    ggATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCa                                               <  2:1152503/149‑1 (MQ=255)
                                                                                                    ggATGTGGCGGAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCa                                               <  1:1146157/149‑1 (MQ=255)
                                                                                                           gCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGtt                                        >  1:828877/1‑149 (MQ=255)
                                                                                                            cGTAAACTCCTGATCCACCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCTTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGttt                                       <  1:263206/149‑1 (MQ=255)
                                                                                                               aaaCGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTc                                    <  1:29283/149‑1 (MQ=255)
                                                                                                                   gCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTCATCGCCATAGGGCAGTGTGTCGTAATCGATCAGCGCGTTTTTCTtat                                >  2:661445/1‑149 (MQ=255)
                                                                                                                    ccTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTtata                               >  1:494526/1‑149 (MQ=255)
                                                                                                                    ccTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGACGTGCACGGTAATCTATCAGTGCGTTTTTCTtatc                               >  1:555630/1‑148 (MQ=38)
                                                                                                                      ttATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTc                                    >  2:1120203/1‑142 (MQ=255)
                                                                                                                      ttATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGACCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTc                                    <  1:1120203/142‑1 (MQ=255)
                                                                                                                       tATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACgg                            <  1:1287261/149‑1 (MQ=255)
                                                                                                                       tATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACgg                            <  2:1010001/149‑1 (MQ=255)
                                                                                                                         tCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGt                          <  2:933470/149‑1 (MQ=255)
                                                                                                                           cAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTa                        <  1:1341752/149‑1 (MQ=255)
                                                                                                                           cAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTa                        >  1:317593/1‑149 (MQ=255)
                                                                                                                           cAGCCGACCGCCGCAATCTGTCGGCCGGATAGGACGCGTCAAGCGGCGGATCCGGCAAATAGCGCCTGGCTGATAATTACTGAGTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTa                        <  2:34769/149‑1 (MQ=255)
                                                                                                                            aGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTAc                       <  2:882159/149‑1 (MQ=255)
                                                                                                                                 aCCGCCGCGCTCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATc                  <  1:677206/149‑1 (MQ=255)
                                                                                                                                     ccgcGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTc                                    <  1:863587/127‑1 (MQ=255)
                                                                                                                                     ccgcGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTc                                    >  2:863587/1‑127 (MQ=255)
                                                                                                                                              gTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACggg                           >  2:1409861/1‑127 (MQ=255)
                                                                                                                                                 ggCCTGATAGGACGCGTCAAGCGGCGCATCCGGCTAATCGCGCCTGGGTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCtt  <  2:553210/149‑1 (MQ=255)
                                                                                                                                                 ggCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCtt  >  1:1154190/1‑149 (MQ=255)
                                                                                                                                                 ggCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTATGATATAAACGTGTTACCAATCCAGCGGGTAGTTTCtt  <  1:709492/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
ATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTT  >  NC_000913_3_hsa_tpiA/4148315‑4148608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.