New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 4148460NA (NA)10 (0.130) 8/264 8.9 NA noncoding (49/82 nt) REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913_3_hsa_tpiA = 4148493 NA (NA)noncoding (82/82 nt) REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 148 total aligned reads displayed.

TTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTGGAT  >  NC_000913_3_hsa_tpiA/4148345‑4148641
                                                                                                                                                    |                                                                                                                                                    
ttaAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCAAGACTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGc                                                                                                                                                      >  1:1399796/1‑149 (MQ=255)
    aaaaGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAAt                                                                                                                                                  >  1:120096/1‑149 (MQ=255)
         gCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCCGTTGTATGGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAgcgc                                                                                                                                             <  1:1400513/149‑1 (MQ=255)
         gCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAgcgc                                                                                                                                             >  1:357405/1‑149 (MQ=255)
            aCCTGAAAAGTGTGGCCTGAGGGGGGTTCGATGTAAACATTGCGGCCGATCTATTGCCGGATGTTGCGTAAACGCCTTCTCCAGCCCACCGCCGCCATCTGTAGGCCGCATAAGACGCGTCAACCGCCCCACCCGCCCACTAGCGCCTg                                                                                                                                          >  2:429548/1‑149 (MQ=255)
            aCCTGAAAAGTGTGGCCTGAGGGGAGATCGCCGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGACGCGATCTGTAGGCCGGATAAGACGCGACAAGGGTCGCATGCGGGAAATAgcaactg                                                                                                                                          >  1:212139/1‑144 (MQ=255)
             ccTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTgg                                                                                                                                         <  1:1040328/149‑1 (MQ=255)
             ccTGAAAAGGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTgg                                                                                                                                         <  1:1081704/149‑1 (MQ=255)
              cTGAAAAGTGTGGCCTGAGGGGAGTTCGGTGTTAACAGGGCTTCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGc                                                                                                                                        <  2:663926/149‑1 (MQ=38)
                    aGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATaa                                                                                                                                  <  1:1314057/149‑1 (MQ=255)
                      tgtgGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAAtt                                                                                                                                >  2:860564/1‑149 (MQ=255)
                       gtgGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTa                                                                                                                               <  2:1301448/149‑1 (MQ=255)
                        tgGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTAc                                                                                                                              <  2:445688/149‑1 (MQ=255)
                        tgGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTAc                                                                                                                              <  1:778311/149‑1 (MQ=255)
                        tgGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCCCATCCGGCCAATAGCGCCTAGCTGATAAttca                                                                                                                              >  2:677206/1‑147 (MQ=255)
                         tgCCTGAGGGGAGTTCGAGGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACt                                                                                                                             <  2:719545/148‑1 (MQ=255)
                          gCCTGAGGGGAGTTCGATGAAAACATTGCGGCAGTAGCATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTACGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTg                                                                                                                            >  2:1316921/1‑149 (MQ=255)
                           gcggacgggAGTTAGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCAGCGCTCTGTCGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGa                                                                                                                           <  1:324562/143‑1 (MQ=39)
                           ccTGAGGGGAGTTCGATGCAAACATTGCGGCAGTTGTATTGCCGGATATGGCGTAAACGCCTTATCCAGCCGACCGCCGTGATCTGTAGGCCGGATAAGACGCGTGAAGCGTCGCATCCGGCATATAGCGCCTGGCTGATAATTACTGa                                                                                                                           <  1:1092386/149‑1 (MQ=39)
                            cTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAGATAGCGCCTGGCTGATAATTACTGAt                                                                                                                          >  1:394802/1‑149 (MQ=255)
                            cTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGAt                                                                                                                          >  2:306467/1‑149 (MQ=255)
                             tGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGAtt                                                                                                                         >  2:652491/1‑149 (MQ=255)
                              gAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTa                                                                                                                        <  2:884788/149‑1 (MQ=255)
                               aGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTAc                                                                                                                       <  1:377949/149‑1 (MQ=255)
                               aGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTAc                                                                                                                       <  2:974981/149‑1 (MQ=255)
                                  ggAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGGCGGATCCGGCAAGAAGCGCCTGGCTGATAATTACTGATTACCCa                                                                                                                    >  1:1136117/1‑149 (MQ=255)
                                   gAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCAc                                                                                                                   <  2:821797/149‑1 (MQ=255)
                                       tCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGa                                                                                                               <  2:660510/149‑1 (MQ=255)
                                        cGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAgcg                                                                                                                                              <  1:821859/117‑1 (MQ=255)
                                         gattgaaaCGTGGCGGCGGTTGGATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAATCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATc                                                                                                             <  2:1424257/144‑1 (MQ=39)
                                          aTGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCg                                                                                                            <  2:971712/149‑1 (MQ=255)
                                             tAAGCATTGCGGCGGGTGGAGTGCGGGAGGGGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGCAGGCCGGATAAGACGCGTCAAGCGTCGCAGCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCa                                                                                                         <  2:404166/149‑1 (MQ=255)
                                             tAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTCCCGCCGCGGTCTGTAGGCCGGATAAACCCCGTCAAGCGCCGCATCCGGCAAATAGCGCCTGGCTGATGATTACTGACTACCCACCTGATCGCCa                                                                                                         >  2:267908/1‑149 (MQ=255)
                                             tAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCa                                                                                                         >  1:1152503/1‑149 (MQ=255)
                                              aaaCATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAACACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTAGCCACCTGATCGCCAt                                                                                                        <  2:1177418/149‑1 (MQ=255)
                                                 ctgtGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGTCGCGATCTGTAGGCAGGATAATACGCGTCACGCGGCGCATACGTTTAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAgt                                                                                                     <  2:1086622/146‑2 (MQ=255)
                                                  aTTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTAATCGCCATAggg                                                                                                    >  1:904406/1‑149 (MQ=255)
                                                       ggCAGTTGTATTGCCGGATGTGGCGTAAACGCTTTACCCCGCGTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCCCTTGATCGCCATAGGGCtgtg                                                                                               <  2:1368891/149‑1 (MQ=38)
                                                        gCAGTTGTATTGCCGGATGTTGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgtgt                                                                                              >  2:709492/1‑149 (MQ=255)
                                                        gCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgtgt                                                                                              >  1:581426/1‑149 (MQ=255)
                                                           gTTGTATTGCCGGTTGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTc                                                                                           <  2:20889/149‑1 (MQ=255)
                                                            ttGTATTGCCGGATGTGGCGTAAACGCCGTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGAAgtggggcc                                                                                          >  1:286920/1‑144 (MQ=255)
                                                               tATTGGCGTATGGTGCTTAAAGCCCTTATTCAGCCTACCTCCGCGATCTGGAGGACGGATAACACTCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTAGTaa                                                                                       <  2:570965/149‑1 (MQ=255)
                                                               tATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgt                                                                                                >  2:642642/1‑140 (MQ=255)
                                                                aTTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAAt                                                                                      <  1:306467/149‑1 (MQ=255)
                                                                 ttGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATc                                                                                     <  2:209838/149‑1 (MQ=255)
                                                                    ccGGATGTGGCGTAACCGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGAt                                                                                  <  1:824250/149‑1 (MQ=255)
                                                                    ccGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGAt                                                                                  >  1:774222/1‑149 (MQ=255)
                                                                      ggagctgGCGCAAACGCCTTACCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCa                                                                                <  1:913851/144‑1 (MQ=255)
                                                                        aTGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGt                                                                              <  2:1287701/149‑1 (MQ=255)
                                                                          gtgGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGc                                                                            <  1:999330/149‑1 (MQ=255)
                                                                             gCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGACCAGTGCGtt                                                                         >  2:1130890/1‑149 (MQ=255)
                                                                                 aaaCGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTc                                                                     <  1:860564/149‑1 (MQ=255)
                                                                                     gCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTCATCGCCATAGGGCAGTGTGTCGTAATCGATCAGCGCGTTTTTCTtat                                                                 >  2:661445/1‑149 (MQ=255)
                                                                                      ccTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCATCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTtata                                                                >  1:449915/1‑149 (MQ=255)
                                                                                      ccTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTtata                                                                >  1:494526/1‑149 (MQ=255)
                                                                                        ttATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTc                                                                     >  2:1120203/1‑142 (MQ=255)
                                                                                        ttATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGACCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTc                                                                     <  1:1120203/142‑1 (MQ=255)
                                                                                         tATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACgg                                                             <  1:1287261/149‑1 (MQ=255)
                                                                                         tATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACgg                                                             <  2:1010001/149‑1 (MQ=255)
                                                                                           tCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGt                                                           <  2:933470/149‑1 (MQ=255)
                                                                                             cAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTa                                                         <  1:1341752/149‑1 (MQ=255)
                                                                                             cAGCCGACCGCCGCAATCTGTCGGCCGGATAGGACGCGTCAAGCGGCGGATCCGGCAAATAGCGCCTGGCTGATAATTACTGAGTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTa                                                         <  2:34769/149‑1 (MQ=255)
                                                                                              aGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTAc                                                        <  2:882159/149‑1 (MQ=255)
                                                                                                   aCCGCCGCGCTCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATc                                                   <  1:677206/149‑1 (MQ=255)
                                                                                                       ccgcGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTc                                                                     <  1:863587/127‑1 (MQ=255)
                                                                                                               tGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGtt                                       >  1:312600/1‑149 (MQ=255)
                                                                                                                gTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACggg                                                            <  1:1409861/127‑1 (MQ=255)
                                                                                                                gTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACggg                                                            >  2:1409861/1‑127 (MQ=255)
                                                                                                                   gggcGGATAAGACGCGTCAAGCGTGGCATCCGGCAAATAGCGCCGGGCTGATAATTACTGATTACCCACCTGATCGCCACAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCtt                                   <  2:586495/146‑1 (MQ=255)
                                                                                                                   ggCCTGATAGGACGCGTCAAGCGGCGCATCCGGCTAATCGCGCCTGGGTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCtt                                   <  2:553210/149‑1 (MQ=255)
                                                                                                                   ggCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCtt                                   >  1:1154190/1‑149 (MQ=255)
                                                                                                                   ggCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTATGATATAAACGTGTTACCAATCCAGCGGGTAGTTTCtt                                   <  1:709492/149‑1 (MQ=255)
                                                                                                                    gCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACTAATCCAGCGAGTCGTGTCgtt                                  <  2:317593/149‑1 (MQ=255)
                                                                                                                    gCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCttt                                  <  1:737784/149‑1 (MQ=255)
                                                                                                                    gCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCttt                                  >  1:858527/1‑149 (MQ=255)
                                                                                                                          tAAGACGCGTCAAGCGCCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCAGAGGGCAGTGTGGCGTAATCGATCAGTGCGTTTTTCTGATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTg                            <  1:627179/149‑1 (MQ=255)
                                                                                                                           aaGACGGCTCAAGCGTCTGATCCGTCAAATAGCGCCTGGCTGATAATTTCTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGc                           <  2:86559/149‑1 (MQ=255)
                                                                                                                              aCGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGa                        <  2:1154190/149‑1 (MQ=255)
                                                                                                                                  gTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTca                    <  2:1136117/149‑1 (MQ=255)
                                                                                                                                   tCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAAc                              <  2:1116419/138‑1 (MQ=255)
                                                                                                                                   tCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTcac                   >  2:404129/1‑149 (MQ=255)
                                                                                                                                   tCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGAGAATTACTGATTACCCAGCTGATCGCCATATGGCAGTGTGCCGTAATCGATCAGTGCGTTTTTCTTATACGGCTTACCAATCCATCGCGTAGTTCCTTTGAACTGCGGATTcac                   >  2:1252233/1‑149 (MQ=255)
                                                                                                                                   tCAACCGTGGCATCCGGCAAATAGCGCATGGTTGATAATTACTGACTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTCTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTcac                   <  1:1339637/149‑1 (MQ=255)
                                                                                                                                     aaGCGTCGAATCCGGGAAATAGCGGCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTcacca                 <  2:799426/149‑1 (MQ=255)
                                                                                                                                       gCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCtt                                   >  2:861918/1‑129 (MQ=255)
                                                                                                                                       gCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACt               <  2:1399796/149‑1 (MQ=255)
                                                                                                                                             cATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTGTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACgg         <  1:1120624/149‑1 (MQ=255)
                                                                                                                                              aTCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACggg        >  1:871160/1‑149 (MQ=255)
                                                                                                                                               tCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCgg                                             >  2:1286996/1‑111 (MQ=255)
                                                                                                                                               tCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCgg                                             <  1:1286996/111‑1 (MQ=255)
                                                                                                                                                 cGGCAAATAGCGCCTGGCTGATAACTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTg     <  1:112670/149‑1 (MQ=255)
                                                                                                                                                  ggCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTGATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTgg    >  1:1195976/1‑149 (MQ=255)
                                                                                                                                                  ggCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTgg    >  1:525253/1‑149 (MQ=255)
                                                                                                                                                  ggCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTgg    >  1:685186/1‑149 (MQ=255)
                                                                                                                                                  ggCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTAGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTgg    >  2:465851/1‑149 (MQ=255)
                                                                                                                                                  ggCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGCCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTgg    >  2:1260832/1‑149 (MQ=255)
                                                                                                                                                   gCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTGGa   >  2:692872/1‑149 (MQ=255)
                                                                                                                                                    cAAATATCGCCNGGCGGTGACTTACTGNTTACNCACCTTATCTTCATAGGGTAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTCTACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTGGAt  <  1:267908/149‑1 (MQ=255)
                                                                                                                                                    cAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCTGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTGGAt  <  1:1316921/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TTAAAAAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAATCCAGCGGGTAGTTTCTTTGAACTGCGGATTCACCACTGAACGGGTTGGAT  >  NC_000913_3_hsa_tpiA/4148345‑4148641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.