New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 2856434NA (NA)4 (0.090) 4/262 6.6 NA noncoding (9/24 nt) REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913_3_hsa_tpiA = 2856440 NA (NA)noncoding (15/24 nt) REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TGCGCGTGCTGAAAGAAACCAACGGCGTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGATGACGCCACAGCATTCTCGGCCCGGCCCAAC  >  NC_000913_3_hsa_tpiA/2856286‑2856574
                                                                                                                                                    |                                                                                                                                            
tgCGCGTGCTGAAAGAAACCAACGGCGTGGTTGCCGGGCCTAAAGGCGCTGCACAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGGTTTAACTTCAAATTGCCGGACAg                                                                                                                                              >  1:154411/1‑149 (MQ=255)
      tGCTGAAAGAAACCAACGGCGTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGc                                                                                                                                        <  1:90299/149‑1 (MQ=255)
          gaaagaaaCCAACGGCGTGGTTGCCGGGCCTAAAGGAGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCGGGGAATTGATAAATCGGACTTAGTTTAAGTGCAAGATGCCGGGCAAATCTGCCTGt                                                                                                                                    >  2:14907/1‑149 (MQ=255)
             agcaaCCGACGGCGTGGTTGCCGGGCATAAAGGCGCTGCGCAACGTCGGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAAGCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCg                                                                                                                                 <  1:778853/146‑1 (MQ=255)
               aaaCCAACGGCGTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGc                                                                                                                               <  2:780910/149‑1 (MQ=255)
                  ccACCGGCGTGGTTGCCGGGCGTAAAGTCGCTGCTAAACGTCTGGGGCTTAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGACAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATa                                                                                                                            <  2:377932/149‑1 (MQ=255)
                  ccAACGGCGTGGTTGCCGGGCCTATAGGCGCTGCGCAACGTCTGGGGCTGAATCGCACGACCCTGCTGTCGCGGATGCAGCGGCTGGGAATTGTTAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATa                                                                                                                            <  1:801077/149‑1 (MQ=255)
                  ccAACGGCGTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATa                                                                                                                            <  1:509406/149‑1 (MQ=255)
                       ggCGTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTAtt                                                                                                                       <  1:422274/149‑1 (MQ=255)
                          gTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCAt                                                                                                                    >  1:626251/1‑149 (MQ=255)
                           tGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGACTTACCTGCAAACTGCCGGACAGATCTGCCTGTCCGGCAATCTATTCATg                                                                                                                   >  2:528148/1‑149 (MQ=255)
                             gTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAg                                                                                                                 <  1:505068/149‑1 (MQ=255)
                                  cGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTACTCATGAGGttgt                                                                                                            >  1:533907/1‑147 (MQ=255)
                                     gCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTc                                                                                                         <  1:109026/149‑1 (MQ=255)
                                        tAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGa                                                                                                      <  1:338538/149‑1 (MQ=255)
                                        tAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGAATGAAGCGGCTGGGAATTGATGAATCGGCATCGATTTAACTGCAAATTGCCGGAACGATCTGCCCGTCCGGCATACTATTCATGAGGTTTTTTCGGa                                                                                                      <  2:825040/149‑1 (MQ=255)
                                          aaGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACg                                                                                                    >  2:399737/1‑149 (MQ=255)
                                                 tGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATAtttt                                                                                             <  2:803117/149‑1 (MQ=255)
                                                     cAACGTCTGGGGCTGAAACGCACGACCATGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCg                                                                                         >  2:855544/1‑149 (MQ=255)
                                                             ggggCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACTGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCt                                                                                 <  1:855544/149‑1 (MQ=255)
                                                              gggCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTg                                                                                >  2:594753/1‑149 (MQ=255)
                                                               ggCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGGCAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTgg                                                                               >  1:137487/1‑149 (MQ=255)
                                                                  tGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCAc                                                                            <  1:291456/149‑1 (MQ=255)
                                                                           cGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCtt                                                                   <  1:312026/149‑1 (MQ=255)
                                                                                 tgctgTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGAGGATATTTTTCGGGCAGTTCTGGCACCGGACGCTTGTCATc                                                             >  1:161401/1‑149 (MQ=255)
                                                                                 tgctgTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATc                                                             >  1:396549/1‑149 (MQ=255)
                                                                                    tgTCACGGATGAAGCGGCTGGGAATTGATAAATCGGTATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCgat                                                          <  1:411943/149‑1 (MQ=255)
                                                                                                 gCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACg                                             <  1:399737/149‑1 (MQ=255)
                                                                                                     cTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTa                                         >  2:430707/1‑149 (MQ=255)
                                                                                                              gATAAACCGGCATTGATTTAACTGCAAACTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGAt                                <  1:137508/149‑1 (MQ=255)
                                                                                                                 aaaTCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGATGAc                             <  1:694656/149‑1 (MQ=255)
                                                                                                                 aaaTCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTAATCGATGAGATGACGCACGGTTAAGATCGGATGAc                             >  1:779761/1‑149 (MQ=255)
                                                                                                                         aTTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTATCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCATGGTTAAGATCGGATGACGCCACAGc                     >  1:855189/1‑149 (MQ=255)
                                                                                                                                            gCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGATGACGCCACAGCATTCTCGGCCCGGCCCAAc  >  2:477010/1‑149 (MQ=255)
                                                                                                                                            gCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGATGACGCCACAGCATTCTCGGCCCGGCCCAAc  >  1:237891/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                            
TGCGCGTGCTGAAAGAAACCAACGGCGTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGATGACGCCACAGCATTCTCGGCCCGGCCCAAC  >  NC_000913_3_hsa_tpiA/2856286‑2856574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.