New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 2856434NA (NA)4 (0.090) 4/262 6.6 NA noncoding (9/24 nt) REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913_3_hsa_tpiA = 2856440 NA (NA)noncoding (15/24 nt) REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TGCTGAAAGAAACCAACGGCGTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGATGACGCCACAGCATTCTCGGCCCGGCCCAACGCATAATCTGTTTC  >  NC_000913_3_hsa_tpiA/2856292‑2856588
                                                                                                                                                    |                                                                                                                                                    
tGCTGAAAGAAACCAACGGCGTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGc                                                                                                                                                      <  1:90299/149‑1 (MQ=255)
    gaaagaaaCCAACGGCGTGGTTGCCGGGCCTAAAGGAGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCGGGGAATTGATAAATCGGACTTAGTTTAAGTGCAAGATGCCGGGCAAATCTGCCTGt                                                                                                                                                  >  2:14907/1‑149 (MQ=255)
       agcaaCCGACGGCGTGGTTGCCGGGCATAAAGGCGCTGCGCAACGTCGGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAAGCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCg                                                                                                                                               <  1:778853/146‑1 (MQ=255)
         aaaCCAACGGCGTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGc                                                                                                                                             <  2:780910/149‑1 (MQ=255)
            ccACCGGCGTGGTTGCCGGGCGTAAAGTCGCTGCTAAACGTCTGGGGCTTAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGACAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATa                                                                                                                                          <  2:377932/149‑1 (MQ=255)
            ccAACGGCGTGGTTGCCGGGCCTATAGGCGCTGCGCAACGTCTGGGGCTGAATCGCACGACCCTGCTGTCGCGGATGCAGCGGCTGGGAATTGTTAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATa                                                                                                                                          <  1:801077/149‑1 (MQ=255)
            ccAACGGCGTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATa                                                                                                                                          <  1:509406/149‑1 (MQ=255)
                 ggCGTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTAtt                                                                                                                                     <  1:422274/149‑1 (MQ=255)
                    gTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCAt                                                                                                                                  >  1:626251/1‑149 (MQ=255)
                     tGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGACTTACCTGCAAACTGCCGGACAGATCTGCCTGTCCGGCAATCTATTCATg                                                                                                                                 >  2:528148/1‑149 (MQ=255)
                       gTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAg                                                                                                                               <  1:505068/149‑1 (MQ=255)
                            cGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTACTCATGAGGttgt                                                                                                                          >  1:533907/1‑147 (MQ=255)
                               gCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTc                                                                                                                       <  1:109026/149‑1 (MQ=255)
                                  tAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGa                                                                                                                    <  1:338538/149‑1 (MQ=255)
                                  tAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGAATGAAGCGGCTGGGAATTGATGAATCGGCATCGATTTAACTGCAAATTGCCGGAACGATCTGCCCGTCCGGCATACTATTCATGAGGTTTTTTCGGa                                                                                                                    <  2:825040/149‑1 (MQ=255)
                                    aaGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACg                                                                                                                  >  2:399737/1‑149 (MQ=255)
                                           tGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATAtttt                                                                                                           <  2:803117/149‑1 (MQ=255)
                                               cAACGTCTGGGGCTGAAACGCACGACCATGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCg                                                                                                       >  2:855544/1‑149 (MQ=255)
                                                       ggggCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACTGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCt                                                                                               <  1:855544/149‑1 (MQ=255)
                                                        gggCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTg                                                                                              >  2:594753/1‑149 (MQ=255)
                                                         ggCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGGCAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTgg                                                                                             >  1:137487/1‑149 (MQ=255)
                                                            tGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCAc                                                                                          <  1:291456/149‑1 (MQ=255)
                                                                     cGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCtt                                                                                 <  1:312026/149‑1 (MQ=255)
                                                                           tgctgTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGAGGATATTTTTCGGGCAGTTCTGGCACCGGACGCTTGTCATc                                                                           >  1:161401/1‑149 (MQ=255)
                                                                           tgctgTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATc                                                                           >  1:396549/1‑149 (MQ=255)
                                                                              tgTCACGGATGAAGCGGCTGGGAATTGATAAATCGGTATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCgat                                                                        <  1:411943/149‑1 (MQ=255)
                                                                                           gCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACg                                                           <  1:399737/149‑1 (MQ=255)
                                                                                               cTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTa                                                       >  2:430707/1‑149 (MQ=255)
                                                                                                        gATAAACCGGCATTGATTTAACTGCAAACTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGAt                                              <  1:137508/149‑1 (MQ=255)
                                                                                                           aaaTCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGATGAc                                           <  1:694656/149‑1 (MQ=255)
                                                                                                           aaaTCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTAATCGATGAGATGACGCACGGTTAAGATCGGATGAc                                           >  1:779761/1‑149 (MQ=255)
                                                                                                                   aTTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTATCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCATGGTTAAGATCGGATGACGCCACAGc                                   >  1:855189/1‑149 (MQ=255)
                                                                                                                                      gCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGATGACGCCACAGCATTCTCGGCCCGGCCCAAc                >  2:477010/1‑149 (MQ=255)
                                                                                                                                      gCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGATGACGCCACAGCATTCTCGGCCCGGCCCAAc                >  1:237891/1‑149 (MQ=255)
                                                                                                                                               aTCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGATGACGCCACAGCATTGTCGGCCCGGCGCAACGCATAAGCt       >  2:493078/1‑149 (MQ=255)
                                                                                                                                                 cTGCCTGTCCGGCATACTATTCATGAGGTTTTTGCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGATGACGCCACAGCATTCTCGGCCCGGCCCAACGCATAATCTGt     <  2:810434/149‑1 (MQ=255)
                                                                                                                                                 cTGCCTGTCCGGCATACTATCCATGAAGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGATGACGCCACAGCATTCTCGGCCCGGCCCAACGCATAATCTGt     <  1:504752/149‑1 (MQ=255)
                                                                                                                                                    ccTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCTATGAGATGACGCACGTTTAAGATCGGATGACGCCACAGCATTCTCGGCCCGGCCCAACGCATAATCTGTTTc  >  1:83056/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TGCTGAAAGAAACCAACGGCGTGGTTGCCGGGCCTAAAGGCGCTGCGCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAACTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCATGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTGGCACCGGACGCTTGTCATCGATGAGATGACGCACGGTTAAGATCGGATGACGCCACAGCATTCTCGGCCCGGCCCAACGCATAATCTGTTTC  >  NC_000913_3_hsa_tpiA/2856292‑2856588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.