| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 3216668 = | 36 (0.860) | 5 (0.130) | 5/270 | 4.9 | 11.0% | noncoding (68/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 4457193 | 47 (1.180) | noncoding (27/84 nt) | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGGCCTTCATGTTTACAACACCCTTCGTGATGATGGCTCATATCAGCCTCCTTTTGCTTAATTAGATATATCTAATTTATATCTGATATGAGCGTTCTTGCAAGTGTAAAAATGATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_tpiA/3216820‑3216668‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatGCGGCGTGAACGCCTTATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTC < NC_000913_3_hsa_tpiA/4457193‑4457048 CTGGCCTTCATGTTTACAACACCCTTCGTGATGATGGCTCATATCAGCCTCCTTTTGCTTAATTAGCTATATCTAATTTATATCTGATATGAGCGTTCTTGCAAGTGTAAAAATGATTTTTAAACGTGGACTCATCTCACACGTAGGCC > 1:383088/1‑149 TTAATTAGATATATCTAATTTATATCTGATATGAGCGTTCTTGCAAGTGTAAAAATGATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGC > 1:550033/1‑118 TTAATTAGATATATCTAATTTATATCTGATATGAGCGTTCTTGCAAGTGTAAAAATGATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGC < 2:550033/118‑1 TTAGATATATCTAATTTATATCTGATATGAGCGTTCTTGCAAGTGTAAAAATGATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGCC > 1:324378/1‑115 TTAGATATATCTAATTTATATCTGATATGAGCGTTCTTGCAAGTGTAAAAATGATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGCC < 2:324378/115‑1 aAGGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAA < 2:256358/148‑1 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATG < 2:438106/149‑1 GATGCGGCGTGAACGCCTTATTCGGCCTCCGTATACTATACCTGGCTCAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTAGTCAGTCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTC < 1:602213/149‑1 CTGGCCTTCATGTTTACAACACCCTTCGTGATGATGGCTCATATCAGCCTCCTTTTGCTTAATTAGATATATCTAATTTATATCTGATATGAGCGTTCTTGCAAGTGTAAAAATGATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_tpiA/3216820‑3216668‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatGCGGCGTGAACGCCTTATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTC < NC_000913_3_hsa_tpiA/4457193‑4457048 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |