New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3216668 =	36 (0.860)	5 (0.130)	5/270	4.9	11.0%	noncoding (68/78 nt)	REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_hsa_tpiA	= 4457193	47 (1.180)					noncoding (27/84 nt)	REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACCATATTCTGGTGATGAGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTG  >  NC_000913_3_hsa_tpiA/4457048‑4457340                                                                                                                                                  |                                                                                                                                                    gACCATATTCTGGTGATGAGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGACTGACTAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTGAGCCAGGTATAGTATACGGAGGCCGAATAAGGCGTTCACGCCGCATc                                                                                                                                                  >  1:602213/1‑149 (MQ=255)    cATATTCTGGTGATGAGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                                                                                                               >  2:438106/1‑149 (MQ=255)      tatTCTGGTGATGAGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                                                             >  2:375477/1‑149 (MQ=255)        ttCTGGTGATGAGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCCtt                                                                                                                                           >  2:256358/1‑149 (MQ=255)         tCTGGTGATGAGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAttt                                                                                                                                          <  2:580118/149‑1 (MQ=255)         tCTGGTGATGAGCAACGGCGGTTGTGGTGGGATACAGCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAttt                                                                                                                                          <  2:224270/149‑1 (MQ=255)            ggTGTTGAGTAAACGCTGTGTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGGGAAGAAGGCGGAAGCCGAGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCTGATAAGGCGTTCACGCCGCATCCGGCATTTGAg                                                                                                                                       <  2:113476/149‑1 (MQ=255)            ggTGATGAGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAg                                                                                                                                       <  2:210119/149‑1 (MQ=255)            gaggatgaGCAACGGCGGTGCTGTGGGTGTCTATCAGAAACTGCTGGATGGGCTGGCGAACAAGGTGGACGCCGTGCAGACATTCGGCCCTAGCCAGATATAGTATGCGGAGGCCGGATAAGTCGTTTACGCCCCCTCCGGCATTTGAg                                                                                                                                       <  1:590615/146‑1 (MQ=255)                         ggcggTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGAt                                                                                                                          >  1:468856/1‑149 (MQ=255)                              ttttGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGAc                                                                                                                     >  1:324542/1‑149 (MQ=255)                                  ggtggGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCtt                                                                                                                 <  1:375477/149‑1 (MQ=255)                                  ggtggGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCtt                                                                                                                 <  1:438106/149‑1 (MQ=255)                                    tggGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCTCATCCGGCATTTGAGCATAGTGCCTGATGCGCCGCttca                                                                                                               >  2:601332/1‑147 (MQ=255)                                    tggGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGa                                                                                                               >  1:648325/1‑149 (MQ=255)                                    tggGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGa                                                                                                               >  2:279374/1‑149 (MQ=255)                                    tggGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGa                                                                                                               <  2:325720/149‑1 (MQ=255)                                            aTCAGAAACTGCTGGACGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCtt                                                                                                       <  1:521637/149‑1 (MQ=255)                                              cAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTAt                                                                                                     <  1:487112/149‑1 (MQ=255)                                               aGAAATGGCTGGAGTGGCTGGAGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGTCAGAGATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATc                                                                                                    <  2:317497/149‑1 (MQ=37)                                                gAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCa                                                                                                   >  2:28720/1‑149 (MQ=255)                                                 aaaCTGCTGGATGGGCTGGCGAAGAGGGCGGAAGCCGCGCAGTAATCCGGCCTTAGCCAGATATAGGATGCGTAGGCCGGATAAAGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGGTGCGACGCTTGATGCGTCTTATCAg                                                                                                  >  1:651297/1‑149 (MQ=39)                                                   aCTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGAGAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGc                                                                                                <  1:28720/149‑1 (MQ=255)                                                       ctgGATGGGCTGGGGAAGAGGGCGGAAGCCGGGCAGTAATTCGGCCTTAGCCAGTTATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTAc                                                                                            <  2:682891/149‑1 (MQ=255)                                                       ctgGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTAATGCGACGCTTGATGAGTCTTGTCAGGCCTAc                                                                                            >  2:417798/1‑149 (MQ=255)                                                               gCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTAGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCAACGCCAATCGCGTCTTATCAGGCCTACAGGTGCAc                                                                                    >  2:688143/1‑149 (MQ=37)                                                                cTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCAcc                                                                                   <  2:468856/149‑1 (MQ=255)                                                                 tGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGCTGCGTCTTATCCGGCCTACCGGTGCAccc                                                                                  >  2:194623/1‑148 (MQ=255)                                                                   gCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGt                                                                                                          <  1:284823/123‑1 (MQ=255)                                                                   gCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGt                                                                                                          >  2:284823/1‑123 (MQ=255)                                                                     gaagaaGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGGCCACCGTATc                                                                              >  2:172571/1‑149 (MQ=255)                                                                           ggCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCaa                                                                        >  1:465528/1‑149 (MQ=255)                                                                             cGGAAGCCGCGGAGGACTTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGCTAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTTATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAAc                                                                      <  2:312863/149‑1 (MQ=37)                                                                               gAAGCCGGGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCa                                                                    <  2:40044/149‑1 (MQ=255)                                                                               gAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCa                                                                    >  1:380562/1‑149 (MQ=255)                                                                               gAAGCCGCGCAGTAATTCGGCCTTAGACAGATATAGTATAGGTAAGAAGGATCAGACGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCa                                                                    <  2:41523/149‑1 (MQ=37)                                                                                        cAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACAt                                                           <  2:465528/149‑1 (MQ=255)                                                                                        cAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACAt                                                           >  2:637833/1‑149 (MQ=255)                                                                                              ttCGGCCTTAGCCAGATATAGTATGCGTAGTCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGAACCGTATCCGGCAAACCATACTCACATaaacaa                                                     >  2:264877/1‑149 (MQ=255)                                                                                              ttCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATcaacaa                                                     >  1:64393/1‑149 (MQ=255)                                                                                                  gCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGaa                                                 >  1:449280/1‑149 (MQ=255)                                                                                                         ccAGATATAGTATGCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTAcc                                          <  1:299689/149‑1 (MQ=255)                                                                                                             atatAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTc                                      <  2:648325/149‑1 (MQ=255)                                                                                                              tataGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCg                                     <  1:95356/149‑1 (MQ=255)                                                                                                                 aggaTGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTtc                                  <  1:587351/146‑1 (MQ=255)                                                                                                                   gaggCGTAGGCCGGATAAGGCGTTAACGCAGCATCCGGGATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTtctc                                <  2:203153/146‑1 (MQ=255)                                                                                                                              cGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACACACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTcgc                     >  1:19398/1‑149 (MQ=255)                                                                                                                                              gccgcATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCAcc                                                                                   >  1:127446/1‑71 (MQ=255)                                                                                                                                              gccgcATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCAcc                                                                                   <  2:127446/71‑1 (MQ=255)                                                                                                                                                 gcATCCTGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTg  <  2:242409/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GACCATATTCTGGTGATGAGCAACGGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCATAGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAAAATCTG  >  NC_000913_3_hsa_tpiA/4457048‑4457340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.