New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 79980	33 (0.790)	4 (0.100)	4/268	5.3	11.9%	coding (885/1401 nt)	leuC	3‑isopropylmalate dehydratase large subunit
	?	NC_000913_3_hsa_tpiA	= 79994	28 (0.710)					coding (871/1401 nt)	leuC	3‑isopropylmalate dehydratase large subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACCGATAAACACTTTGTCGATAGCCACTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCCGGATCGGGAATATTGTCGTTCACGGAAATCACCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/79829‑79980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcacctggGGCACCAATCCCGGCCAGGTGATTTCCGTGAACGACAATATTCCCGATCCGGCTTCGTTTGCCGATCCGGTTGAACGCGCGTCGGCAGAAAAAGCGCTGGCCTATATGGGGCTGAAACCGGGTATTCCGCTGACCGAAGTGGCTATC  <  NC_000913_3_hsa_tpiA/79994‑79848                                                                                                                                                                                                                                                                                                             AACCGATAAACACTTTGTCGATAGCCACTTCGGTCAGCGGAATACACGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAAAGAAGCCGGATAGGGAAACTTGTCGTTCACGGCAATCACC                                                                                                                                                        >  2:531068/1‑149    CGATAAACACTTTGTCGATAGCCACTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCCGGATCGGGAATATTGTCGTTCACGGAAATCACCTGG                                                                                                                                                     <  2:718524/149‑1                                                                                                 CCGGATCGGCAAACGAAGCCGGATCGGGAATATTGTCGTTCACGGAAATCACCTGGGGCACCAATCCCGGCCAGGTGATT                                                                                                                             >  1:610099/1‑80                                                                                                 CCGGATCGGCAAACGAAGCCGGATCGGGAATATTGTCGTTCACGGAAATCACCTGGGGCACCAATCCCGGCCAGGTGATT                                                                                                                             <  2:610099/80‑1                                                                                                                                              AAATCACCTGGGGCACCAATCCCGGCCAGGTGATTTCCGTGAACGACAATATTCCCGATCCGGCTTCGTTTGCCGATCCGGTTGAACGCGCGTCGGCAGAAAAAGCGCTGGCCTATATGGGGCTGAAACCG                             >  1:436391/1‑131                                                                                                                                              AAATCACCTGGGGCACCAATCCCGGCCAGGTGATTTCCGTGAACGACAATATTCCCGAGCCGGCTTCGTTTGCCGATCCGGTTGAACGCGCGTCGGCAGAAAAAGCGCTGGCCTATATGGGGCTGAAACCG                             <  2:436391/131‑1                                                                                                                                                     CTGGGGCACCAATCCCGGCCAGGTGATTTCCGTGAACGACAATATTCCCGATCCGGCTTCGTTTGCCGATCCGGTTGAACGCGCGTCGGCAGAAAAAGCGCTGGCCTATATGGGGCTGAAACCGGGTATTCCGCTGACCG             >  1:680535/1‑140                                                                                                                                                     CTGGGGCACCAATCCCGGCCAGGTGATTTCCGTGAACGACAATATTCCCGATCCGGCTTCGTTTGCCGATCCGGTTGAACGCGCGTCGGCAGAAAAAGCGCTGGCCTATATGGGGCTGAAACCGGGTATTCCGCTGACCG             <  2:680535/140‑1                                                                                                                                                       GGGGCACCAATCCCGGCCAGGTGATTTCCGTGAACGACAATATTCCCGATCCGGCTTCGTTTGCCGATCCGGTTGAACGCGCGTCGGCAGAAAAAGCGCTGGCCTATATGGGGCTGAAACCGGGTATTCCGCTGACCGAAGTGGCTATC  <  2:15288/149‑1                                                                                                                                                                                                                                                                                                             AACCGATAAACACTTTGTCGATAGCCACTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCCGGATCGGGAATATTGTCGTTCACGGAAATCACCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/79829‑79980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcacctggGGCACCAATCCCGGCCAGGTGATTTCCGTGAACGACAATATTCCCGATCCGGCTTCGTTTGCCGATCCGGTTGAACGCGCGTCGGCAGAAAAAGCGCTGGCCTATATGGGGCTGAAACCGGGTATTCCGCTGACCGAAGTGGCTATC  <  NC_000913_3_hsa_tpiA/79994‑79848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.