New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2996361 =	NA (NA)	30 (0.720)	25/284	0.9	90.9%	intergenic (‑1/+11)	ygeO/insD1	pseudogene, orgA family, part of T3SS PAI ETT2 remnant/IS2 transposase TnpB
	?	NC_000913_3_hsa_tpiA	3725924 =	3 (0.070)					coding (38/996 nt)	wecH	O‑acetyltransferase for enterobacterial common antigen (ECA)

TTTCATTTATTTCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTC  >  NC_000913_3_hsa_tpiA/2996213‑2996494                                                                                                                                                     |                                                                                                                                      tttCATTTATTTCCAGCGGTATAGCTGATAAATAATCCCTTAGTATATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTATCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCTAATTGTTTAtt                                                                                                                                       >  2:290686/1‑149 (MQ=255)       ttatttCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGGACCTTATAAAAAAAGCCGCCATCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCCATAGAAGTAAATTCCAATTGATTATTGAAtgt                                                                                                                                 >  2:252613/1‑147 (MQ=255)          tttCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGcc                                                                                                                              >  2:205227/1‑149 (MQ=255)              cAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCta                                                                                                                          <  2:208651/149‑1 (MQ=255)              cAGCGGTATAGCTGATAAATAATCCATTAGTACATCAGGAACCGTAT‑AAAAAACCCGCGTTCTGCAAACGTTTCTCGATAAAAGTGACAACCACTGAGTAAGCAGATCACTGGAAGTAAATTCCAATTGTATATTGGATTTGCCCCtat                                                                                                                         >  1:548916/1‑149 (MQ=255)                            ataaataaTCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATc                                                                                                            >  2:35690/1‑149 (MQ=255)                                 taatCCCTTAGTCCATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTCACAACCACTGAGTAAACAGATCAATGAAAGTAAATTCCAATTGTTTATAGGATTTCCCCCTATATTTCCAGCCACCAGttt                                                                                                       >  2:391329/1‑148 (MQ=255)                                       cTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACtt                                                                                                 <  1:205227/149‑1 (MQ=255)                                              cATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCa                                                                                                                  <  1:235875/125‑1 (MQ=255)                                              cATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCa                                                                                                                  >  2:235875/1‑125 (MQ=255)                                               aTCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCAtt                                                                                         >  1:55626/1‑149 (MQ=255)                                               aTCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCAtt                                                                                         >  2:24474/1‑149 (MQ=255)                                                  aGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACa                                                                                      >  2:412482/1‑149 (MQ=255)                                                         ttATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACACGCCCGc                                                                               >  2:50233/1‑149 (MQ=255)                                                                aaaaCCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCa                                                                        <  2:443645/149‑1 (MQ=255)                                                                         gtacTGAAAACCTTACTCGATAAAAGTGACAACAACTGAGAAAACAAATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGAAGCCGCAGATATTccc                                                               <  2:266690/146‑1 (MQ=21)                                                                               cAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCACTGGAAGTAAATTCCACTTGTTTATTGGAGTTGCCCCTATATTTCAAGAAATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgcg                                                         >  1:346690/1‑149 (MQ=25)                                                                                     tttCTCGATAAAAGTTACAACCACTAAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTACATTTCCATACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGAt                                                   <  1:57122/149‑1 (MQ=255)                                                                                       tctcGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCAAATTGTTTATTGGATTTGCCCCTATATTTCCAGACAACTGTTATCACTTAACCCGTTACAAGCCCGCTGCCGCATATTTTTCCTTGGTGGGCGATaa                                                 >  1:364603/1‑149 (MQ=25)                                                                                         tcGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAAcc                                               >  1:359476/1‑149 (MQ=255)                                                                                            aTAAAAGTGACAACCACTGAGTAAACAGATGAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCACTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCAGTGGCGAGCGATAACCCAg                                            >  1:67006/1‑149 (MQ=255)                                                                                               aaaGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCTGCGATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATGCCCGTGGCGCGCGATAACCCAgcgc                                         >  1:707429/1‑149 (MQ=21)                                                                                                   tGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTa                                     >  1:215564/1‑149 (MQ=255)                                                                                                     aCAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTGCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATg                                   >  1:119981/1‑149 (MQ=255)                                                                                                          cACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCTATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGAt                              >  2:639055/1‑149 (MQ=255)                                                                                                          cACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATCTTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGAt                              >  1:370412/1‑149 (MQ=255)                                                                                                                 aaaaCAGATCAATGGAAGTAAATTCCAATTGTATATTGGAATTGCCCCTATATTTCCACACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTc                       <  1:290686/148‑1 (MQ=255)                                                                                                                      aGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTtat                  <  1:35690/149‑1 (MQ=255)                                                                                                                      aGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTtat                  >  2:583133/1‑149 (MQ=255)                                                                                                                                     aaTTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCct   <  1:412482/149‑1 (MQ=40)                                                                                                                                      aTTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGGTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCCCACTATGCGGATGCCATTCCTTATAATGCCACAACGCctc  >  2:446214/1‑149 (MQ=14)                                                                                                                                                     |                                                                                                                                      TTTCATTTATTTCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTC  >  NC_000913_3_hsa_tpiA/2996213‑2996494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.