New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2434769 =	43 (1.250)	4 (0.130)	4/260	4.2	9.3%	intergenic (‑28/+55)	dedA/truA	DedA family inner membrane protein/tRNA pseudouridine(38‑40) synthase
	?	NC_000913_3_hsa_tpiA	2434804 =	39 (1.240)					intergenic (‑63/+20)	dedA/truA	DedA family inner membrane protein/tRNA pseudouridine(38‑40) synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACAGAACAAAATTAAGAACAAAATGGCATAAACCCAGACGCCGTACTCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCC  >  NC_000913_3_hsa_tpiA/2434624‑2434911                                                                                                                                                  |                                                                                                                                               cacaGAACAAAATTAAGAACAAAATGGCATAAACCCAGACGCCGTACTCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTc                                                                                                                                             <  1:192895/149‑1 (MQ=255)         aaaaTTAAGAACAAAATGGCATAAACCCAGACGCCGTACTCCGGGAACAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATATGCCTATGCCTTGTACTGGTCATCTTTCAGGCTGTa                                                                                                                                     >  1:259935/1‑149 (MQ=255)          aaaTGAAGAACAAAATGGCATAAACCCAGACGCCGTACTCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTaa                                                                                                                                    <  2:333549/149‑1 (MQ=255)                aGAACAAAATGGCATAACCCCAGACGCCGTACTCCTCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAAGAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGt                                                                                                                              <  1:105588/149‑1 (MQ=255)                 gAACAAAATGGCATTAACCCAGACGCCGTACTCCGCGACCAGCTCCGCCAGATGCACGTCAACGTGCAGGATAAAATCGATGTGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTCCAGGCTGTAACTACGtt                                                                                                                             >  2:546426/1‑149 (MQ=255)                      aaaTGGCATAAACCCAGACGCCGTACTCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTAGCTa                                                                                                                        <  1:488325/149‑1 (MQ=255)                                   ccAGACGCCGTACTCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGt                                                                                                           >  1:340220/1‑149 (MQ=255)                                         gCCGTACTCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAg                                                                                                     >  1:222194/1‑149 (MQ=255)                                              aCTCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCatta                                                                                                <  2:222194/149‑1 (MQ=255)                                                tCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCattatt                                                                                              <  1:492996/149‑1 (MQ=255)                                                  cgcgACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGACGTGTTCCGAGCATTATtct                                                                                            >  2:94846/1‑149 (MQ=255)                                                   gcgACCAGCTCTGCCAGAGGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATtatc                                                                                           <  2:550326/149‑1 (MQ=255)                                                           ctctGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAGTGTTCCGAGCATTATTCTCGTTAGTcc                                                                                   >  2:505828/1‑149 (MQ=255)                                                                ccAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTTCGAGCATTATTCTCGTTAGTCCGcccg                                                                              >  1:228415/1‑147 (MQ=255)                                                                         cGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCgg                                                                     <  2:316701/149‑1 (MQ=255)                                                                                   cAGCATAAAATCACGGAGGAAGTGAATCAGGATCATATGTGCCTACGCCTTGTACTCGTCATATTTCAGGTCGTAATTGCGGTGGCTACTGACTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCTAGAAATAGCGCGCCCATTCGc                                                           <  2:57157/149‑1 (MQ=255)                                                                                           aaTCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTgg                                                   >  1:257780/1‑149 (MQ=255)                                                                                           aaTCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTgg                                                   >  1:397126/1‑149 (MQ=255)                                                                                            aTCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGa                                                  >  1:50698/1‑149 (MQ=255)                                                                                               gATGAGGAAATAAATCAGTTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGa                                               <  1:397712/149‑1 (MQ=255)                                                                                                aTGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCCTTAGTCCGCCAGCAATACCGGGCCACTTGGCGGTTTTgaacgct                                              >  2:504923/1‑143 (MQ=255)                                                                                                  gAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCa                                            >  1:97687/1‑149 (MQ=255)                                                                                                     gAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATAc                                         <  1:558447/149‑1 (MQ=255)                                                                                                       aataaatCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCg                                       <  2:50698/149‑1 (MQ=255)                                                                                                       aataaatCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCg                                       <  1:369878/149‑1 (MQ=255)                                                                                                           aatCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTAAGTTGGTTACAGCATGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCa                                   >  1:259891/1‑149 (MQ=255)                                                                                                            atCAGGTCCATATTTGCCTATGCCTGGTACTCGTCATCATCCATTCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGCGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGCAAGACACTACCGGTCat                                  >  2:256274/1‑148 (MQ=255)                                                                                                               aGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGt                               >  1:460123/1‑149 (MQ=255)                                                                                                               aGGTCCAGATTTGCCTATGCCTTGGACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGt                               <  1:92941/149‑1 (MQ=255)                                                                                                                     atatTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGCAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCa                         <  1:271518/149‑1 (MQ=255)                                                                                                                             cTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCAGTCAGGGTAATCTACCGCGAcc                 >  2:375115/1‑149 (MQ=255)                                                                                                                              tATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCa                <  1:513456/149‑1 (MQ=255)                                                                                                                              tATGCCTTCTCCTTGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCa                <  2:62200/149‑1 (MQ=255)                                                                                                                                tGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCTGTCAGGGTAATCCACCGCGACCAGa              >  1:227904/1‑149 (MQ=255)                                                                                                                                     tGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGACAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGTCCTTACCGGTCAGGGTAATCCACCGCGACCAGATACAg         <  1:145476/149‑1 (MQ=255)                                                                                                                                     tGTACTCGTCATCTTTCAGGCGGTAACTACGTTGGCTACAGCCTGAAATGTACAGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAg         <  1:292243/149‑1 (MQ=255)                                                                                                                                      gTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGc        <  2:397126/149‑1 (MQ=255)                                                                                                                                       gaCTCGTCATCTTTCAGGCTGTAACCCCGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAAGAGCGTGCCCATTGGCGGTTTTGGAAGATCATACCGATCAGGTTAATCCACCGCCACCAGATACAGcc       >  2:273068/2‑149 (MQ=255)                                                                                                                                         cTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCt     >  1:193766/1‑149 (MQ=255)                                                                                                                                          tCGTCATCTTTCAGGCTGTAACTACGTTAGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCtt    >  2:89546/1‑149 (MQ=255)                                                                                                                                            gTCATCTTTCAGGCTGTAACTACGTCGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTACTCCGCCAGAAATAGCGCTCCCATTGGCGGTTTTGGAACATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTcc  <  1:546426/149‑1 (MQ=255)                                                                                                                                               aTCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGt                                                                                         >  2:408934/1‑59 (MQ=255)                                                                                                                                               aTCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGt                                                                                         <  1:408934/59‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                               CACAGAACAAAATTAAGAACAAAATGGCATAAACCCAGACGCCGTACTCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCC  >  NC_000913_3_hsa_tpiA/2434624‑2434911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.