New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2434769 =	43 (1.250)	4 (0.130)	4/260	4.2	9.3%	intergenic (‑28/+55)	dedA/truA	DedA family inner membrane protein/tRNA pseudouridine(38‑40) synthase
	?	NC_000913_3_hsa_tpiA	2434804 =	39 (1.240)					intergenic (‑63/+20)	dedA/truA	DedA family inner membrane protein/tRNA pseudouridine(38‑40) synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCAGACGCCGTACTCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCCGCCAGCGTTCTGTCCTTTGCCG  >  NC_000913_3_hsa_tpiA/2434658‑2434951                                                                                                                                                   |                                                                                                                                                    ccAGACGCCGTACTCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGt                                                                                                                                                   >  1:340220/1‑149 (MQ=255)       gCCGTACTCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAg                                                                                                                                             >  1:222194/1‑149 (MQ=255)            aCTCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCatta                                                                                                                                        <  2:222194/149‑1 (MQ=255)              tCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCattatt                                                                                                                                      <  1:492996/149‑1 (MQ=255)                cgcgACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGACGTGTTCCGAGCATTATtct                                                                                                                                    >  2:94846/1‑149 (MQ=255)                 gcgACCAGCTCTGCCAGAGGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATtatc                                                                                                                                   <  2:550326/149‑1 (MQ=255)                         ctctGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAGTGTTCCGAGCATTATTCTCGTTAGTcc                                                                                                                           >  2:505828/1‑149 (MQ=255)                              ccAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTTCGAGCATTATTCTCGTTAGTCCGcccg                                                                                                                      >  1:228415/1‑147 (MQ=255)                                       cGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCgg                                                                                                             <  2:316701/149‑1 (MQ=255)                                                 cAGCATAAAATCACGGAGGAAGTGAATCAGGATCATATGTGCCTACGCCTTGTACTCGTCATATTTCAGGTCGTAATTGCGGTGGCTACTGACTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCTAGAAATAGCGCGCCCATTCGc                                                                                                   <  2:57157/149‑1 (MQ=255)                                                         aaTCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTgg                                                                                           >  1:257780/1‑149 (MQ=255)                                                         aaTCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTgg                                                                                           >  1:397126/1‑149 (MQ=255)                                                          aTCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGa                                                                                          >  1:50698/1‑149 (MQ=255)                                                             gATGAGGAAATAAATCAGTTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGa                                                                                       <  1:397712/149‑1 (MQ=255)                                                              aTGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCCTTAGTCCGCCAGCAATACCGGGCCACTTGGCGGTTTTgaacgct                                                                                      >  2:504923/1‑143 (MQ=255)                                                                gAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCa                                                                                    >  1:97687/1‑149 (MQ=255)                                                                   gAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATAc                                                                                 <  1:558447/149‑1 (MQ=255)                                                                     aataaatCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCg                                                                               <  1:369878/149‑1 (MQ=255)                                                                     aataaatCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCg                                                                               <  2:50698/149‑1 (MQ=255)                                                                         aatCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTAAGTTGGTTACAGCATGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCa                                                                           >  1:259891/1‑149 (MQ=255)                                                                          atCAGGTCCATATTTGCCTATGCCTGGTACTCGTCATCATCCATTCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGCGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGCAAGACACTACCGGTCat                                                                          >  2:256274/1‑148 (MQ=255)                                                                             aGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGt                                                                       >  1:460123/1‑149 (MQ=255)                                                                             aGGTCCAGATTTGCCTATGCCTTGGACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGt                                                                       <  1:92941/149‑1 (MQ=255)                                                                                   atatTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGCAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCa                                                                 <  1:271518/149‑1 (MQ=255)                                                                                           cTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCAGTCAGGGTAATCTACCGCGAcc                                                         >  2:375115/1‑149 (MQ=255)                                                                                            tATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCa                                                        <  1:513456/149‑1 (MQ=255)                                                                                            tATGCCTTCTCCTTGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCa                                                        <  2:62200/149‑1 (MQ=255)                                                                                              tGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCTGTCAGGGTAATCCACCGCGACCAGa                                                      >  1:227904/1‑149 (MQ=255)                                                                                                   tGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGACAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGTCCTTACCGGTCAGGGTAATCCACCGCGACCAGATACAg                                                 <  1:145476/149‑1 (MQ=255)                                                                                                   tGTACTCGTCATCTTTCAGGCGGTAACTACGTTGGCTACAGCCTGAAATGTACAGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAg                                                 <  1:292243/149‑1 (MQ=255)                                                                                                    gTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGc                                                <  2:397126/149‑1 (MQ=255)                                                                                                     gaCTCGTCATCTTTCAGGCTGTAACCCCGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAAGAGCGTGCCCATTGGCGGTTTTGGAAGATCATACCGATCAGGTTAATCCACCGCCACCAGATACAGcc                                               >  2:273068/2‑149 (MQ=255)                                                                                                       cTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCt                                             >  1:193766/1‑149 (MQ=255)                                                                                                        tCGTCATCTTTCAGGCTGTAACTACGTTAGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCtt                                            >  2:89546/1‑149 (MQ=255)                                                                                                          gTCATCTTTCAGGCTGTAACTACGTCGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTACTCCGCCAGAAATAGCGCTCCCATTGGCGGTTTTGGAACATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTcc                                          <  1:546426/149‑1 (MQ=255)                                                                                                             aTCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGt                                                                                                                                 >  2:408934/1‑59 (MQ=255)                                                                                                             aTCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGt                                                                                                                                 <  1:408934/59‑1 (MQ=255)                                                                                                                             cTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTgccg                       >  1:219195/1‑149 (MQ=255)                                                                                                                                      cTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCAGCAAGACACAGCGGGCCCATTTGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGGCCAGATACAGCCCTTCCGCCTTTGCCGTTGATGCCGCCAGCGTTc              >  1:205143/1‑149 (MQ=255)                                                                                                                                              tGAAATGTTCCGAGCATTATTCTCATTCGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTTATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCCGCCAGCGTTCTGTCCttt      <  1:526570/149‑1 (MQ=255)                                                                                                                                                 aaTGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCCGCCAGCGTTCTGTCCTTTgcc   <  1:89546/149‑1 (MQ=255)                                                                                                                                                  aTGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCCGCCAGCGTTCTGTCCTTTgccg  >  2:311277/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CCAGACGCCGTACTCCGCGACCAGCTCTGCCAGATGCACGTCAATGTGCAGGATAAAATCGATGAGGAAATAAATCAGGTCCATATTTGCCTATGCCTTGTACTCGTCATCTTTCAGGCTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCCGCCAGCGTTCTGTCCTTTGCCG  >  NC_000913_3_hsa_tpiA/2434658‑2434951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.