New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	1137089 =	38 (1.120)	5 (0.150)	5/268	3.7	11.8%	coding (816/1098 nt)	flgI	putative flagellar basal body protein
	?	NC_000913_3_hsa_tpiA	1137105 =	38 (1.170)					coding (832/1098 nt)	flgI	putative flagellar basal body protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGTGGCAACAGTTCCCAGGTCCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAGCGGCGGT  >  NC_000913_3_hsa_tpiA/1136951‑1137224                                                                                                                                           |                                                                                                                                        gAGTGGCAACAGTTCCCAGGTCCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAg                                                                                                                               <  1:310266/149‑1 (MQ=255)       cAACAGTTCCCAGGTCCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGAGGCTAAAGTAGTGATTAACTCGCGCACCGGTGCGGTGGTGATGAATCGCGAAGTGACCCTAGACAGCTGCGCGGTGGCGCAgg                                                                                                                         >  2:535042/1‑149 (MQ=255)       cAACAGTTCCCAGGTCCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAgg                                                                                                                         >  2:87652/1‑149 (MQ=255)       cAACAGTGTCCAGGGCCGCTTCCTTGCCCATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCCCCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAgg                                                                                                                         <  2:588800/149‑1 (MQ=255)        aaCAGTTCCCAGGTCCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGATGCGCGGTAGCGCAggg                                                                                                                        >  1:129783/1‑149 (MQ=255)               ctcAGGTCCGGTTCTTTGCAGATATTCAGCACAAGCAGGTTAATGTCACCCCGCAGGAAGCTAAATTAGTGATTAACTCGCGCACCGGTTCGGTTGTGAGGAAGCGCGAAGTGTCCCTCGACAGCTGCGCGGTAGCGCAGGGGAAtctc                                                                                                                 <  2:443490/147‑1 (MQ=255)                  aGGTCCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCa                                                                                                              <  2:465366/149‑1 (MQ=255)                       cGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAACGTGTTGATGAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAAc                                                                                                         <  1:441032/149‑1 (MQ=255)                              ttGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAAtctc                                                                                                                 >  1:245490/1‑134 (MQ=255)                              ttGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAAtctc                                                                                                                 <  2:245490/134‑1 (MQ=255)                                  cGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTc                                                                                              >  1:406211/1‑149 (MQ=255)                                            aaTATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTACCTCGCGCACCGGCCAGGTGGTGACCAATACAGCAGTGACTCGCTTCAGCTGCGCGTTAGCGCAGGGGTATCTCTCAGGAACAGTTAATCGTCAGGCCAATGt                                                                                    >  2:142710/1‑149 (MQ=255)                                                     gTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTCATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGGATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCagccagcc                                                                           >  2:236155/1‑149 (MQ=255)                                                           gTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAAtctctc                                                                                                               >  2:121441/1‑107 (MQ=255)                                                           gTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAAtctctc                                                                                                               <  1:121441/107‑1 (MQ=255)                                                              aCCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACAcc                                                                  >  1:110200/1‑149 (MQ=255)                                                                        aCGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTtggtggt                                                        <  2:345026/149‑1 (MQ=255)                                                                            tAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAATAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGAc                                                    <  1:522871/149‑1 (MQ=255)                                                                               agtagtGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGa                                                 >  2:555307/1‑149 (MQ=255)                                                                               agtagtGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGa                                                 >  2:256625/1‑149 (MQ=255)                                                                                gtagtGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGCCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGAc                                                >  1:513887/1‑149 (MQ=255)                                                                                    tGATTAACTGGCGCACCGGTGCGGTGGTGATGAATCGCGAAGGGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACtgtg                                            <  1:305455/149‑1 (MQ=255)                                                                                    tGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACtgtg                                            <  1:236334/149‑1 (MQ=255)                                                                                    tGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGCCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACtgtg                                            <  2:513887/149‑1 (MQ=255)                                                                                      aTTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCa                                                                                                                           >  1:486798/1‑68 (MQ=255)                                                                                      aTTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCa                                                                                                                           <  2:486798/68‑1 (MQ=255)                                                                                      aTTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGt                                          <  1:87652/149‑1 (MQ=255)                                                                                      aTTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGAAAGATGAGCGGTAGCGCAGGGGAATATCTGAGTAACAGTTAATCGTCACACCAATGGCAGCCAGCCACATACACCGGTTGGTGGTGGACAGACTGTGGt                                          >  2:293908/1‑149 (MQ=255)                                                                                                  aCCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAAc                              >  2:368398/1‑149 (MQ=255)                                                                                                            tggtgATGAATCGCGAAGTGACCCTCGACACTTGGGCGGTGGCGCAGGGGAATCTCTCAGTAACAGTTACTCTTCAGTCCATTGTGACCCAACAAGATCCACCCTGTGGTGGTGGACAGCCTGTGGTTACTCCACAAACGCAGATCgct                    >  2:452857/1‑147 (MQ=255)                                                                                                                gatgaATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTAc                <  1:368398/149‑1 (MQ=255)                                                                                                                 atgaATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAAc                                                                                                         <  2:314862/59‑1 (MQ=255)                                                                                                                 atgaATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAAc                                                                                                         >  1:314862/1‑59 (MQ=255)                                                                                                                  tgaATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTTTCAGTAACAGTTAATCGTCAGGCCAATGTCACAACGCCAGGTTCCCTGACTCGCGTTGCACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGc              <  1:293908/149‑1 (MQ=255)                                                                                                                          gAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAgcgg      <  1:486742/149‑1 (MQ=255)                                                                                                                              tGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGCAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCGCAAACGCAGATCGATTTACGCCAGTGCGGCGGt  >  1:277463/1‑149 (MQ=255)                                                                                                                                       aCAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTcag                                                                                 <  1:277649/61‑1 (MQ=255)                                                                                                                                       aCAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTcag                                                                                 >  2:277649/1‑61 (MQ=255)                                                                                                                                           |                                                                                                                                        GAGTGGCAACAGTTCCCAGGTCCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAGCGGCGGT  >  NC_000913_3_hsa_tpiA/1136951‑1137224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.