New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	1137089 =	38 (1.120)	5 (0.150)	5/268	3.7	11.8%	coding (816/1098 nt)	flgI	putative flagellar basal body protein
	?	NC_000913_3_hsa_tpiA	1137105 =	38 (1.170)					coding (832/1098 nt)	flgI	putative flagellar basal body protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAACAGTTCCCAGGTCCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAG  >  NC_000913_3_hsa_tpiA/1136957‑1137253                                                                                                                                                     |                                                                                                                                                     cAACAGTTCCCAGGTCCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGAGGCTAAAGTAGTGATTAACTCGCGCACCGGTGCGGTGGTGATGAATCGCGAAGTGACCCTAGACAGCTGCGCGGTGGCGCAgg                                                                                                                                                      >  2:535042/1‑149 (MQ=255) cAACAGTTCCCAGGTCCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAgg                                                                                                                                                      >  2:87652/1‑149 (MQ=255) cAACAGTGTCCAGGGCCGCTTCCTTGCCCATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCCCCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAgg                                                                                                                                                      <  2:588800/149‑1 (MQ=255)  aaCAGTTCCCAGGTCCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGATGCGCGGTAGCGCAggg                                                                                                                                                     >  1:129783/1‑149 (MQ=255)         ctcAGGTCCGGTTCTTTGCAGATATTCAGCACAAGCAGGTTAATGTCACCCCGCAGGAAGCTAAATTAGTGATTAACTCGCGCACCGGTTCGGTTGTGAGGAAGCGCGAAGTGTCCCTCGACAGCTGCGCGGTAGCGCAGGGGAAtctc                                                                                                                                              <  2:443490/147‑1 (MQ=255)            aGGTCCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCa                                                                                                                                           <  2:465366/149‑1 (MQ=255)                 cGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAACGTGTTGATGAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAAc                                                                                                                                      <  1:441032/149‑1 (MQ=255)                        ttGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAAtctc                                                                                                                                              >  1:245490/1‑134 (MQ=255)                        ttGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAAtctc                                                                                                                                              <  2:245490/134‑1 (MQ=255)                            cGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTc                                                                                                                           >  1:406211/1‑149 (MQ=255)                                      aaTATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTACCTCGCGCACCGGCCAGGTGGTGACCAATACAGCAGTGACTCGCTTCAGCTGCGCGTTAGCGCAGGGGTATCTCTCAGGAACAGTTAATCGTCAGGCCAATGt                                                                                                                 >  2:142710/1‑149 (MQ=255)                                               gTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTCATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGGATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCagccagcc                                                                                                        >  2:236155/1‑149 (MQ=255)                                                     gTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAAtctctc                                                                                                                                            <  1:121441/107‑1 (MQ=255)                                                     gTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAAtctctc                                                                                                                                            >  2:121441/1‑107 (MQ=255)                                                        aCCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACAcc                                                                                               >  1:110200/1‑149 (MQ=255)                                                                  aCGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTtggtggt                                                                                     <  2:345026/149‑1 (MQ=255)                                                                      tAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAATAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGAc                                                                                 <  1:522871/149‑1 (MQ=255)                                                                         agtagtGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGa                                                                              >  2:555307/1‑149 (MQ=255)                                                                         agtagtGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGa                                                                              >  2:256625/1‑149 (MQ=255)                                                                          gtagtGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGCCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGAc                                                                             >  1:513887/1‑149 (MQ=255)                                                                              tGATTAACTGGCGCACCGGTGCGGTGGTGATGAATCGCGAAGGGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACtgtg                                                                         <  1:305455/149‑1 (MQ=255)                                                                              tGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACtgtg                                                                         <  1:236334/149‑1 (MQ=255)                                                                              tGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGCCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACtgtg                                                                         <  2:513887/149‑1 (MQ=255)                                                                                aTTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGt                                                                       <  1:87652/149‑1 (MQ=255)                                                                                aTTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGAAAGATGAGCGGTAGCGCAGGGGAATATCTGAGTAACAGTTAATCGTCACACCAATGGCAGCCAGCCACATACACCGGTTGGTGGTGGACAGACTGTGGt                                                                       >  2:293908/1‑149 (MQ=255)                                                                                            aCCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAAc                                                           >  2:368398/1‑149 (MQ=255)                                                                                                      tggtgATGAATCGCGAAGTGACCCTCGACACTTGGGCGGTGGCGCAGGGGAATCTCTCAGTAACAGTTACTCTTCAGTCCATTGTGACCCAACAAGATCCACCCTGTGGTGGTGGACAGCCTGTGGTTACTCCACAAACGCAGATCgct                                                 >  2:452857/1‑147 (MQ=255)                                                                                                          gatgaATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTAc                                             <  1:368398/149‑1 (MQ=255)                                                                                                           atgaATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAAc                                                                                                                                      <  2:314862/59‑1 (MQ=255)                                                                                                           atgaATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAAc                                                                                                                                      >  1:314862/1‑59 (MQ=255)                                                                                                            tgaATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTTTCAGTAACAGTTAATCGTCAGGCCAATGTCACAACGCCAGGTTCCCTGACTCGCGTTGCACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGc                                           <  1:293908/149‑1 (MQ=255)                                                                                                                    gAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAgcgg                                   <  1:486742/149‑1 (MQ=255)                                                                                                                        tGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGCAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCGCAAACGCAGATCGATTTACGCCAGTGCGGCGGt                               >  1:277463/1‑149 (MQ=255)                                                                                                                                 aCAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTcag                                                                                                              >  2:277649/1‑61 (MQ=255)                                                                                                                                 aCAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTcag                                                                                                              <  1:277649/61‑1 (MQ=255)                                                                                                                                         gcgGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAGCGGCGGTTCGCTGCAAAGCGTACg              <  1:275024/149‑1 (MQ=255)                                                                                                                                            gTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTc           <  1:555307/149‑1 (MQ=255)                                                                                                                                            gTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTc           <  1:256625/149‑1 (MQ=255)                                                                                                                                                cgcAGGGGAATCTCTCAGGAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAgc       <  1:257343/149‑1 (MQ=255)                                                                                                                                                     gggAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAg  >  1:377548/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CAACAGTTCCCAGGTCCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAG  >  NC_000913_3_hsa_tpiA/1136957‑1137253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.