New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3596422 =	23 (0.680)	5 (0.160)	5/266	3.7	17.3%	intergenic (‑19/+29)	livH/livK	branched‑chain amino acid ABC transporter permease/leucine transporter subunit
	?	NC_000913_3_hsa_tpiA	3596443 =	26 (0.810)					intergenic (‑40/+8)	livH/livK	branched‑chain amino acid ABC transporter permease/leucine transporter subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCGCCTTTTTCATCCCAGTTCAGCGGCCCAATCACGGTGTTTGCACCGTTAGCTTTTAAATCTTTCACCAGC  >  NC_000913_3_hsa_tpiA/3596299‑3596589                                                                                                                                                 |                                                                                                                                                   aaTGGCGTAAACCAGGGTGTAGCCGATGGGTATCAGCGCGTAGGTACTGCCCAGCGTGGCGACGTTAAACAGCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGga                                                                                                                                                <  2:367208/149‑1 (MQ=255)    gCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGgatga                                                                                                                                             >  2:406407/1‑149 (MQ=255)             cATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGc                                                                                                                                    >  1:225602/1‑149 (MQ=255)             cATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGc                                                                                                                                    >  2:106596/1‑149 (MQ=255)                         gATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGa                                                                                                                        >  1:544279/1‑149 (MQ=255)                                    gcgcGTAGGTACCGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTGTACGGGCGGAGGAATCATCACTTGGCTGCCGTGGATGAACCGTCGGCGt                                                                                                             <  1:592604/149‑1 (MQ=255)                                           ggTACTGCCCAGCGTGACGCCGTCAAACATCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGACCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTg                                                                                                      <  1:520544/149‑1 (MQ=255)                                                tGCCCAGCGTGCCGCCGTTAAACATCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCTCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGa                                                                                                 <  1:306755/149‑1 (MQ=255)                                                   ccAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGacac                                                                                              >  1:274216/1‑149 (MQ=255)                                                           aCGCCGTTAAACATCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAaaatca                                                                                      >  1:519237/1‑149 (MQ=255)                                                             gCCGTTAAACATCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAaaatcaaa                                                                                    <  2:519237/149‑1 (MQ=255)                                                                       aTCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGa                                                                          >  2:264417/1‑149 (MQ=255)                                                                          tgctgcAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGgatgat                                                                                                                                            >  1:3900/1‑80 (MQ=255)                                                                          tgctgcAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGgatgat                                                                                                                                            <  2:3900/80‑1 (MQ=255)                                                                           gctgcAAGCAAAACAACAACTGCAAAGCCATAAGGATACCTTTCTAATTCCGTTGGCTTGTTACGTGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTGGGCGTGCCACTGGAAGCAACCAAAATCAATTCCCTTAAGATCGc                                                                      >  2:205734/1‑149 (MQ=255)                                                                               cAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCGCCttt                                                                  >  2:305123/1‑149 (MQ=255)                                                                                      tACAAAAACTGCTTAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCGCCTTTTTCATcc                                                           <  2:175338/149‑1 (MQ=255)                                                                                                             gTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCGCCTTTTTCATCCCAGTTCAGCGGCCCAATAACGgt                                    >  1:309740/1‑149 (MQ=255)                                                                                                                 tcTTTCTAAGCCCGCCCCCATTTTACGGGCGGTTGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCGCCTTTTTCATCCCAGTTCAGCGGCCCAATCACGGTGttt                                <  1:352828/148‑1 (MQ=255)                                                                                                                        aaaCCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCGCCTTTTTCATCCCAGTTCAGCGGCCCAATCACGGTGTTTGCACCGt                         <  1:305123/149‑1 (MQ=255)                                                                                                                            ccgcccgcATTTTACGTGCGGGGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCCCCTTTTTCATCCCAGTTCAGCGGCCCAATCACGGTGTTTGCACCGTTAGc                     <  1:491516/149‑1 (MQ=255)                                                                                                                            ccgcccgcATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTACGATCGCCTTTTTCCTCACAGTTCAGCGGCCCAATCACGGTGTTTGCACCGTTAGc                     >  1:529533/1‑149 (MQ=255)                                                                                                                            ccgcccgcATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCGCCTTTTTCATCCCAGTTCAGCGGCCCAATCACGGTGTTTGCACCGTTAGc                     >  1:160758/1‑149 (MQ=255)                                                                                                                               cccgcATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCGCCTTTTTCATCCCAGTTCAGCGGCCCAATCCCGGTGTTTGCACCGTTAGCttt                  >  1:545573/1‑149 (MQ=255)                                                                                                                                caccATTTCACCGGCGGTGGGATGAGCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCGCCTTTTTCATCCCAGTTCAGCGGCCCAATCACGGTGTTTGCACCGTTAGCtttt                 <  2:564835/146‑1 (MQ=255)                                                                                                                                    aaaatgcGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCGCCTTTTTCATCCCAGTTCAGCGGCCCAATCACGGTGTTTGCACCGTTAGCTTTTAAAt             >  1:453311/7‑149 (MQ=255)                                                                                                                                        tACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCGCCTTTTCCTTCGCTGTTCAGCGGCCCAATCACGGTGTTTGCACCGTTAGCTTTTAAATCttt         <  2:251302/149‑1 (MQ=255)                                                                                                                                               ggTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGAGCGCCTTTTTCATCCCAGTTCAGCGGCCCAATCACAGTGTTTGCACCGTTAGCTTTTAAATCTTTCAccagc  <  1:264683/149‑1 (MQ=255)                                                                                                                                               ggTGGGATGATCACTTGGATGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCGCCTTTTTCATCCCAGTTCAGCGGCCCAATCACGGTGTTTGCACCGTTAGCTTTTAAATCTTTCAccagc  <  2:225602/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                   AATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGCGTGCCACTGGAAGACACCAAAATCAAATCCCTTAAGATCGCCTTTTTCATCCCAGTTCAGCGGCCCAATCACGGTGTTTGCACCGTTAGCTTTTAAATCTTTCACCAGC  >  NC_000913_3_hsa_tpiA/3596299‑3596589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.