New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	15310 =	50 (1.190)	3 (0.110) +CTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGG	3/184	4.4	8.7%	intergenic (+12/‑135)	dnaJ/insL1	chaperone Hsp40, DnaK co‑chaperone/IS186 transposase
	?	NC_000913_3_hsa_tpiA	2514263 =	47 (1.120)					intergenic (+19/‑68)	nupC/insL1	nucleoside (except guanosine) transporter/IS186 transposase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTGAACGAAAGGCAGAAACAGCTGCTGCAAGAGCTGCAAGAAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA  >  NC_000913_3_hsa_tpiA/15163‑15458                                                                                                                                                    |                                                                                                                                                     ccTGAACGAAAGGCAGAAACAGCTGCTGCAAGAGCTGCAAGAAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGc                                                                                                                                                     >  1:572198/1‑149 (MQ=255)  cTGAACGAAAGGCAGAAACAGCTGCTGCAAGAGCTGCAAGAAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGcc                                                                                                                                                    >  1:567349/1‑149 (MQ=255)     aaCGAAAGGCAGAAACAGCTGCTGCAAGAGCTGCAAGAAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGc                                                                                                                                                 <  2:711001/149‑1 (MQ=255)                 aaaCAGCTGCTGCAAGAGCTGCAAGAAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGc                                                                                                                                     >  1:660987/1‑149 (MQ=255)                   aCAGCTGCTGCAAGAGCTGCAAGAAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGTCt                                                                                                                                   >  1:108817/1‑149 (MQ=255)                   aCAGCTGCTGCAAGAGCTGCAAGAAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCt                                                                                                                                   <  2:224182/149‑1 (MQ=255)                      gctgctGCAAGAGCTGCAAGAAAGCCTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCACGGGCAGGcttttg                                                                                                                                <  1:235662/149‑6 (MQ=255)                             caagagctgcaagaAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTaaaact                                                                                                                         >  2:131449/1‑147 (MQ=255)                             caagagctgcaagaAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAAt                                                                                                                         <  1:215580/149‑1 (MQ=255)                                gcgctgcaagaAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAgg                                                                                                                      <  1:431302/147‑1 (MQ=255)                                gagctgcaagaAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAgg                                                                                                                      <  1:131449/149‑1 (MQ=255)                                     gcaagaAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGTTAAAAATAGGGTGCg                                                                                                                 >  1:203212/1‑149 (MQ=255)                                        agaAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTg                                                                                                              >  1:234048/1‑149 (MQ=255)                                          aaaGCGTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCGTCTTTGATGGTGTGAAGAAGTTGTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGaa                                                                                                            <  2:208756/149‑1 (MQ=255)                                           aaGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAACGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAg                                                                                                           <  2:572198/149‑1 (MQ=255)                                            aGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCCACATTGATCCATGCCTGGGTAAAAATAGGGTGCGTTGAAGa                                                                                                          <  1:367253/149‑1 (MQ=255)                                               ttCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGatat                                                                                                       <  2:234048/149‑1 (MQ=255)                                               ttCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGatat                                                                                                       >  1:679504/1‑149 (MQ=255)                                                 cGGTGCCCCAACCGGGGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCTGCTAATCTCCCCAGAAGCCTGTCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGc                                                                                                     <  2:309968/149‑1 (MQ=255)                                                   gTGGCCCAACGGGCGAGCACAACAGTCCTCGCTCAAAGAGCTTCGTTGATGGTGTTAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGa                                                                                                   <  2:695787/149‑1 (MQ=255)                                                    tGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGATGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAg                                                                                                  <  1:512643/149‑1 (MQ=255)                                                       cccAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCAc                                                                                               <  2:235148/149‑1 (MQ=255)                                                        ccAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCAcc                                                                                              >  1:185287/1‑149 (MQ=255)                                                               gCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGCAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAg                                                                                       <  1:688561/149‑1 (MQ=255)                                                               gCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAg                                                                                       >  2:334667/1‑149 (MQ=255)                                                                 gAGCACAACAGCCCGGGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTg                                                                                     <  2:166467/149‑1 (MQ=255)                                                                       aacaGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCgggg                                                                               >  1:80805/1‑149 (MQ=255)                                                                        acaGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGTCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGa                                                                              <  1:249996/149‑1 (MQ=255)                                                                        acaGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGa                                                                              <  1:20213/149‑1 (MQ=255)                                                                           gCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGCCCCGCTAACCTCCCAAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAAGAGGGTGCGTTGAAGATATGCGAGCATCTGTAAAGTGGCGGGGATCa                                                                           <  2:421468/149‑1 (MQ=255)                                                                              cgcgCTCAAAGGGCTTCTGTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAAGAGGGTGGGTCGTAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTc                                                                        <  2:381851/149‑1 (MQ=255)                                                                              cgcgCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGTTAACCTCCCCAAAAGCGTGCTCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTc                                                                        <  1:37464/149‑1 (MQ=255)                                                                                   tCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCCCTCCCATa                                                                   >  1:58920/1‑149 (MQ=255)                                                                                     aaaGAGCTTCTATGATGGTGTGAAGAAGTTTTTTGACGACCTGAGTCGCTAACCTCCGTAACAGCCGTACCTTGGACAGGCCTGGTTGAAAATGCGTTGGGTGTAACACATACGATCTCCTGTAGAGTGACGCTGATCATTCCCATacg                                                                 >  2:58970/1‑147 (MQ=255)                                                                                           cttcttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCATGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGCTATGCGAGCACCTGTACAGTGGCGGGGGTCACTCCCATTAGCGCtca                                                           >  2:657021/1‑147 (MQ=255)                                                                                                    tGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTACATTCAgggg                                                  >  1:93093/1‑148 (MQ=255)                                                                                                         tgAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTgg                                             <  1:334667/149‑1 (MQ=255)                                                                                                                 ttttttGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc                                     <  2:167548/149‑1 (MQ=255)                                                                                                                       gacgacCTGCCCCGCTAACCTCCCCAAAAGCCGGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata                               <  2:108817/149‑1 (MQ=255)                                                                                                                       gacgacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata                               >  2:461690/1‑149 (MQ=255)                                                                                                                          gacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGt                                                                                                                                             >  2:94631/1‑36 (MQ=255)                                                                                                                          gacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGt                                                                                                                                             <  1:94631/36‑1 (MQ=255)                                                                                                                               gACCCGCTAACCCCCCCAAAAGCCCGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa                       <  1:262866/149‑1 (MQ=255)                                                                                                                                  ccGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATCGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGCTCACTCCCATAAGCGCTAACTTCAGGCTTGTGGTATTACGCCTGATACGATTTAACGt                    >  2:123367/1‑149 (MQ=255)                                                                                                                                        aCCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt              >  2:698420/1‑149 (MQ=255)                                                                                                                                           tCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTtgtg                                              <  2:153673/114‑1 (MQ=255)                                                                                                                                           tCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTtgtg                                              >  1:153673/1‑114 (MQ=255)                                                                                                                                            tcaaagaaGTCTGCCGGGCGGAAGGCCAGGGTAAAAATAGGGTGCGTCGAAGCAAGGCGAGCACCTGTAAAGTGGCGGGGGTCACGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGACTGCTATGCTATAACGTGCAGATGAAt          <  2:222655/143‑1 (MQ=18)                                                                                                                                              ccAAAAGGCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa        <  2:570238/149‑1 (MQ=255)                                                                                                                                                   aGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc   <  2:660987/149‑1 (MQ=255)                                                                                                                                                    gCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa  <  1:698420/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CCTGAACGAAAGGCAGAAACAGCTGCTGCAAGAGCTGCAAGAAAGCTTCGGTGGCCCAACCGGCGAGCACAACAGCCCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA  >  NC_000913_3_hsa_tpiA/15163‑15458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.