New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	15310 =	50 (1.190)	3 (0.110) +CTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGG	3/184	4.4	8.7%	intergenic (+12/‑135)	dnaJ/insL1	chaperone Hsp40, DnaK co‑chaperone/IS186 transposase
	?	NC_000913_3_hsa_tpiA	2514263 =	47 (1.120)					intergenic (+19/‑68)	nupC/insL1	nucleoside (except guanosine) transporter/IS186 transposase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGCAGGTGCAGTTAAAGGCCTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTC  >  NC_000913_3_hsa_tpiA/2514117‑2514401                                                                                                                                                   |                                                                                                                                           tCGCAGGTGCAGTTAAAGGCCTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCgg                                                                                                                                          <  2:588765/149‑1 (MQ=255)         gCAGTTAAAGGCCTGACTGAAGAGGAAGGAAACGTGTTTTCTACGTTACTCCGGAAGTTGGTTTACGGGTCTACCCGGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAAtt                                                                                                                                  <  1:357834/149‑1 (MQ=255)           aGTTAAAGGCCTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGCTAATTcc                                                                                                                                >  1:532625/1‑149 (MQ=255)           aGTTAAAGGCCTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTcc                                                                                                                                <  1:26734/149‑1 (MQ=255)           aGTTAAAGGCCTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACAAAAAAAAGCCGGGGATGATTca                                                                                                                                >  1:507269/1‑148 (MQ=255)                       gaatgaaGAGCAAGGTAGAGTGGTTCCTCTCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTaa                                                                                                                    <  2:524541/149‑1 (MQ=255)                          tgaaGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGGTAACtt                                                                                                                 >  1:7817/1‑149 (MQ=255)                            aaGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTaa                                                                                                               <  1:425286/149‑1 (MQ=255)                              gagCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAgg                                                                                                             <  1:616547/149‑1 (MQ=255)                                 cAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGCGAGTGTGATGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATCCATAAAGAAGCCGTGGTTAAATCCCGTAAGCGCTAAATTAAGGGtt                                                                                                          >  1:373097/1‑149 (MQ=255)                                     gTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTgg                                                                                                      >  2:665448/1‑149 (MQ=255)                                          gTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATAACTAAAAAAGCCGGTGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAttc                                                                                                 >  2:344435/1‑148 (MQ=255)                                            ggTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGGTAATTCCCATAAGCGCTAACTTAAGGGTGGTGGTATTACg                                                                                               >  1:54026/1‑149 (MQ=255)                                                  tcGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGat                                                                                         >  2:430618/1‑149 (MQ=255)                                                    gCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATCAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGgtat                                                                                       >  2:590362/1‑149 (MQ=255)                                                        cGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTTAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGTTATTACGCCTGATATGAtt                                                                                   <  2:460605/149‑1 (MQ=255)                                                          gTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa                                                                                 >  2:730104/1‑149 (MQ=255)                                                          gTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa                                                                                 >  2:730105/1‑149 (MQ=255)                                                                   tGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTCCCCCTGCTAGGATTTAACGTTCCgt                                                                        >  2:95010/1‑148 (MQ=38)                                                                   tGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa                                                                        >  1:267509/1‑149 (MQ=255)                                                                         aCGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt                                                                  >  2:239849/1‑149 (MQ=255)                                                                            gCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct                                                               >  2:683904/1‑149 (MQ=255)                                                                                      ggTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc                                                                                              >  2:276056/1‑108 (MQ=255)                                                                                      ggTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc                                                                                              <  1:276056/108‑1 (MQ=255)                                                                                       gTGAGGGTGGTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAc                                                    <  2:34026/149‑1 (MQ=255)                                                                                             gtggtgGCTGCGTTAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCa                                              <  2:488338/149‑1 (MQ=255)                                                                                             gtgCGGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCa                                              <  1:95010/149‑1 (MQ=255)                                                                                                   tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTgg                                                                                                      <  1:288354/87‑1 (MQ=255)                                                                                                   tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTgg                                                                                                      >  2:288354/1‑87 (MQ=255)                                                                                                     tGCGTCAATCGCAGCACTGGTGCTGTAAGACCCAACATACAAAAGCCGGGGCTAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATAAAGCCAGATATGATTCAAGGTGCCCATCAACTACTCTCACGAAAACTGGTCAGCAATACt                                      >  2:672270/1‑149 (MQ=18)                                                                                                      gCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa                                                           <  2:302996/127‑1 (MQ=255)                                                                                                      gCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa                                                           >  1:302996/1‑127 (MQ=255)                                                                                                       cGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                    <  1:665448/149‑1 (MQ=255)                                                                                                        gTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc                                   >  2:327375/1‑149 (MQ=255)                                                                                                         tCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCCATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGcc                                  >  2:605197/1‑149 (MQ=255)                                                                                                           aaTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCa                                >  2:726206/1‑149 (MQ=255)                                                                                                                cagcaCTGGTGCTGAAAGACCATACATACAAAAGCCGGGGATAATACCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGCCAGCAATTCTTGCCCATATTg                           <  2:326501/149‑1 (MQ=18)                                                                                                                   caCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTa                        <  1:430618/149‑1 (MQ=255)                                                                                                                        ttGCTGTAAGACCATACATAAAAGAGCTGCGGATAATTCCCATAAGCCCTTACTTAAGGCTGGTGGTATTACGCCTGATATGATTTAACGTGCCTATGAATTACTCTCACGATTACTGGTCAGCAATTTTGGCCCATATTGGTAAGccc                   <  2:149831/148‑1 (MQ=17)                                                                                                                          gCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGACACATGTTGGTAACCCCga                 >  2:304917/1‑149 (MQ=255)                                                                                                                                 gACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTg          >  1:659060/1‑149 (MQ=255)                                                                                                                                     atgcataACAAAGCCGGGGATAATTCTCATAAGCGCTAACTTGAGGGTTGTGGTATTACGCCTGATATGATTTAACGGGCCGATGGATTACTCTCACGATCACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATa      <  2:470525/146‑1 (MQ=14)                                                                                                                                     atacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATa      <  2:664623/149‑1 (MQ=255)                                                                                                                                        cataAAAAAGCCGGGGATAATTCCCATGAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCACATATTGGTAAGCCCGAAGAACTGGATACtt   <  1:617553/149‑1 (MQ=255)                                                                                                                                         ataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTCACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATCCTTc  >  1:608727/1‑149 (MQ=255)                                                                                                                                         ataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGGCTTTTTGTCCCATATTGGTAAGCCCGAAGAACTGGATACTTc  <  1:730104/149‑1 (MQ=14)                                                                                                                                         ataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTATGATCCAGATTGGTAAGCCCGAAGAACTGGATACTTc  <  1:730105/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                           TCGCAGGTGCAGTTAAAGGCCTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTC  >  NC_000913_3_hsa_tpiA/2514117‑2514401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.