New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	1028361 =	NA (NA)	6 (0.160)	5/254	4.8	NA	intergenic (+2/+43)	yccU/hspQ	putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein
	?	NC_000913_3_hsa_tpiA	1028395 =	NA (NA)					intergenic (+36/+9)	yccU/hspQ	putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein
Rejected: Coverage evenness skew score above cutoff.

GCTATTGCCATTGGCGCGAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTT  >  NC_000913_3_hsa_tpiA/1028213‑1028503                                                                                                                                                     |                                                                                                                                               gCTATTGCCATTGGCGCGAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGTTATTGAGATCGCTCGGCTGGGCCTGGCCAAATaaaa                                                                                                                                                <  2:639410/149‑1 (MQ=255)    aTTGCCATGGCCGCCAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAAt                                                                                                                                             <  1:152875/149‑1 (MQ=255)       gCCATTGGCGCGAAAACGCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATccc                                                                                                                                          <  1:235862/149‑1 (MQ=255)         cATTGGCGCGAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCg                                                                                                                                        <  2:414278/149‑1 (MQ=255)           ttGGCGCGAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGa                                                                                                                                      >  1:177360/1‑149 (MQ=255)            tGGCGCGAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGAGCCCTCGCCTGGGTCAAAAAAAAAAAAAAATCCCCGGaa                                                                                                                                     <  2:269323/149‑1 (MQ=255)              gcgcGAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGAAGTACTGGCACGGGATGCCGGGGTAAATGTGGTGGTGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGGCTGGCCAAATAAAAAATCCCCGCAAgg                                                                                                                                   >  1:226530/1‑149 (MQ=255)                   aaaaCTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGCAGGCaaaa                                                                                                                              >  2:360013/1‑149 (MQ=255)                   aaaaCTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCaaaa                                                                                                                              >  2:362238/1‑149 (MQ=255)                            tGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCgg                                                                                                                     <  1:348601/149‑1 (MQ=255)                            tGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTCACCCGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCgg                                                                                                                     <  1:363274/149‑1 (MQ=255)                                   gaCTGGGGGGGATTAATGAGCAAGCGGAAGTAAAGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGACCCCTCGCCTGGGCCTGGCCAAATAAAAAATCAACAAAAAAAAAAAACCTTCCGGGGATTTg                                                                                                              <  2:644211/148‑1 (MQ=255)                                      tGGGGGTGATTAAAGAGCAAGCGGCAATACTGGCACGGGATGCCGGGTTATATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc                                                                                                           >  1:606603/1‑149 (MQ=255)                                       gggggTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGGCCGGCTATTGAGATCCCTCACATCGGCCTGTCTAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTcc                                                                                                          <  2:562157/149‑2 (MQ=255)                                         gggTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg                                                                                                        <  1:233424/149‑1 (MQ=255)                                           gTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGa                                                                                                      >  2:76521/1‑149 (MQ=255)                                              aTTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGCTGGATCGCCGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa                                                                                                   <  1:163650/149‑1 (MQ=255)                                              aTTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa                                                                                                   <  1:163644/149‑1 (MQ=255)                                              aTTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCAAGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa                                                                                                   <  2:464377/149‑1 (MQ=255)                                                tAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAAcc                                                                                                                           >  1:69289/1‑123 (MQ=255)                                                tAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAAcc                                                                                                                           <  2:69289/123‑1 (MQ=255)                                                  aTGAGCAAGCGCGCGGACAGGCACGGGATGCCGGGTGAAATGTGGTGAGGGATCGGTGCCCTGCTATTCAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTa                                                                                               <  2:212955/149‑1 (MQ=255)                                                   tGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTAc                                                                                              <  1:651949/149‑1 (MQ=255)                                                             acAGGACTGGCACGGGATGCCGGTTACCATTTGTTGGTGGATCGCTGCCCGGCTATTGAGACCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgg                                                                                    <  2:343512/148‑1 (MQ=255)                                                                    tGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTgg                                                                             >  1:425400/1‑149 (MQ=255)                                                                     ggCACGGGATGCCGGGTTAAACGTGGTGATTGGTCGCGTCCCGGCTAATGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGa                                                                            <  2:226530/149‑1 (MQ=255)                                                                        aCGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAACATCCCCGGAAGGCAAAAACCTTCCGGGGATTCGTTCAGGGCTCAGTTACGCAGACGCGGGAccagaagaa                                                                         >  1:175132/1‑142 (MQ=255)                                                                           gcaggacGGGTTACATGTGGTGGTGGATCGCTGCCCTGGTATGGAGACCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAgttgtt                                                                      <  2:509222/143‑1 (MQ=255)                                                                               gCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGTCTGGAGTTGTTTGCg                                                                  <  2:606603/149‑1 (MQ=255)                                                                               gCCGGGTTAAATGGGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCg                                                                  <  2:177360/149‑1 (MQ=255)                                                                                ccGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCgg                                                                 >  2:664696/1‑149 (MQ=255)                                                                                   ggTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATg                                                              <  1:114037/149‑1 (MQ=255)                                                                                     ttAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGt                                                            <  2:232400/149‑1 (MQ=255)                                                                                         aTGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc                                                        >  1:455886/1‑149 (MQ=255)                                                                                         aTGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc                                                        >  1:26556/1‑149 (MQ=255)                                                                                           gtggtgATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgcgc                                                      <  1:664696/149‑1 (MQ=255)                                                                                              gtgATGGCTCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCACACGAAGGCAGAAACCTTCCGGGGGTTTGTACAGGGGTTAGTTCCGGATCCGTGAGACCTGGAGATGTTTGCGGAGGTTCTGCGCCAg                                                   >  2:65898/1‑149 (MQ=255)                                                                                               tgATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGc                                                  <  1:76521/149‑1 (MQ=255)                                                                                                     aTCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATcc                                            >  2:430069/1‑149 (MQ=255)                                                                                                      tCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATACAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTATGTGGAGGTTCTGCGCCAGCTCATCCa                                           >  2:491556/1‑149 (MQ=255)                                                                                                              cGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGc                                                                   <  1:356636/117‑1 (MQ=255)                                                                                                              cGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGc                                                                   >  2:356636/1‑117 (MQ=255)                                                                                                               ggCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGAAGGGCTGCGCCAGCTCATCCatggatgggt                                  >  1:154231/1‑147 (MQ=255)                                                                                                                          tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGt                       <  1:446917/149‑1 (MQ=255)                                                                                                                               cGCCTGGGCCTGGGAAAGTAAAAAATCCCCGGAAGTCAAACACCTGCCGGGGAGTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCCGCGCCAGATCGTCCTGGGATGGCTGTTCAGGATGTTCATc                  <  2:86965/149‑1 (MQ=255)                                                                                                                                   tgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATg                        <  2:200113/139‑1 (MQ=255)                                                                                                                                   tgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATg                        >  1:200113/1‑139 (MQ=255)                                                                                                                                         tggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCg        >  1:91611/1‑149 (MQ=255)                                                                                                                                            ccAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTa     >  1:393385/1‑149 (MQ=255)                                                                                                                                               aaTAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACtt  >  1:168038/1‑149 (MQ=255)                                                                                                                                                 gaacaaaTCCCCGGAAGGTTTTTGCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCa                             <  2:127178/116‑1 (MQ=37)                                                                                                                                                     |                                                                                                                                               GCTATTGCCATTGGCGCGAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTT  >  NC_000913_3_hsa_tpiA/1028213‑1028503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.