New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	1028361 =	NA (NA)	6 (0.160)	5/254	4.8	NA	intergenic (+2/+43)	yccU/hspQ	putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein
	?	NC_000913_3_hsa_tpiA	1028395 =	NA (NA)					intergenic (+36/+9)	yccU/hspQ	putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein
Rejected: Coverage evenness skew score above cutoff.

AACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGAACCGGT  >  NC_000913_3_hsa_tpiA/1028247‑1028536                                                                                                                                                     |                                                                                                                                              gaCTGGGGGGGATTAATGAGCAAGCGGAAGTAAAGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGACCCCTCGCCTGGGCCTGGCCAAATAAAAAATCAACAAAAAAAAAAAACCTTCCGGGGATTTg                                                                                                                                               <  2:644211/148‑1 (MQ=255)    tGGGGGTGATTAAAGAGCAAGCGGCAATACTGGCACGGGATGCCGGGTTATATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc                                                                                                                                            >  1:606603/1‑149 (MQ=255)     gggggTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGGCCGGCTATTGAGATCCCTCACATCGGCCTGTCTAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTcc                                                                                                                                           <  2:562157/149‑2 (MQ=255)       gggTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg                                                                                                                                         <  1:233424/149‑1 (MQ=255)         gTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGa                                                                                                                                       >  2:76521/1‑149 (MQ=255)            aTTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGCTGGATCGCCGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa                                                                                                                                    <  1:163650/149‑1 (MQ=255)            aTTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa                                                                                                                                    <  1:163644/149‑1 (MQ=255)            aTTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCAAGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa                                                                                                                                    <  2:464377/149‑1 (MQ=255)                aTGAGCAAGCGCGCGGACAGGCACGGGATGCCGGGTGAAATGTGGTGAGGGATCGGTGCCCTGCTATTCAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTa                                                                                                                                <  2:212955/149‑1 (MQ=255)                 tGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTAc                                                                                                                               <  1:651949/149‑1 (MQ=255)                           acAGGACTGGCACGGGATGCCGGTTACCATTTGTTGGTGGATCGCTGCCCGGCTATTGAGACCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgg                                                                                                                     <  2:343512/148‑1 (MQ=255)                                  tGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTgg                                                                                                              >  1:425400/1‑149 (MQ=255)                                   ggCACGGGATGCCGGGTTAAACGTGGTGATTGGTCGCGTCCCGGCTAATGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGa                                                                                                             <  2:226530/149‑1 (MQ=255)                                      aCGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAACATCCCCGGAAGGCAAAAACCTTCCGGGGATTCGTTCAGGGCTCAGTTACGCAGACGCGGGAccagaagaa                                                                                                          >  1:175132/1‑142 (MQ=255)                                         gcaggacGGGTTACATGTGGTGGTGGATCGCTGCCCTGGTATGGAGACCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAgttgtt                                                                                                       <  2:509222/143‑1 (MQ=255)                                             gCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGTCTGGAGTTGTTTGCg                                                                                                   <  2:606603/149‑1 (MQ=255)                                             gCCGGGTTAAATGGGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCg                                                                                                   <  2:177360/149‑1 (MQ=255)                                              ccGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCgg                                                                                                  >  2:664696/1‑149 (MQ=255)                                                 ggTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATg                                                                                               <  1:114037/149‑1 (MQ=255)                                                   ttAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGt                                                                                             <  2:232400/149‑1 (MQ=255)                                                       aTGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc                                                                                         >  1:455886/1‑149 (MQ=255)                                                       aTGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc                                                                                         >  1:26556/1‑149 (MQ=255)                                                         gtggtgATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgcgc                                                                                       <  1:664696/149‑1 (MQ=255)                                                            gtgATGGCTCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCACACGAAGGCAGAAACCTTCCGGGGGTTTGTACAGGGGTTAGTTCCGGATCCGTGAGACCTGGAGATGTTTGCGGAGGTTCTGCGCCAg                                                                                    >  2:65898/1‑149 (MQ=255)                                                             tgATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGc                                                                                   <  1:76521/149‑1 (MQ=255)                                                                   aTCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATcc                                                                             >  2:430069/1‑149 (MQ=255)                                                                    tCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATACAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTATGTGGAGGTTCTGCGCCAGCTCATCCa                                                                            >  2:491556/1‑149 (MQ=255)                                                                            cGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGc                                                                                                    <  1:356636/117‑1 (MQ=255)                                                                            cGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGc                                                                                                    >  2:356636/1‑117 (MQ=255)                                                                             ggCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGAAGGGCTGCGCCAGCTCATCCatggatgggt                                                                   >  1:154231/1‑147 (MQ=255)                                                                                        tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGt                                                        <  1:446917/149‑1 (MQ=255)                                                                                             cGCCTGGGCCTGGGAAAGTAAAAAATCCCCGGAAGTCAAACACCTGCCGGGGAGTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCCGCGCCAGATCGTCCTGGGATGGCTGTTCAGGATGTTCATc                                                   <  2:86965/149‑1 (MQ=255)                                                                                                 tgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATg                                                         <  2:200113/139‑1 (MQ=255)                                                                                                 tgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATg                                                         >  1:200113/1‑139 (MQ=255)                                                                                                       tggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCg                                         >  1:91611/1‑149 (MQ=255)                                                                                                          ccAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTa                                      >  1:393385/1‑149 (MQ=255)                                                                                                             aaTAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACtt                                   >  1:168038/1‑149 (MQ=255)                                                                                                               gaacaaaTCCCCGGAAGGTTTTTGCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCa                                                              <  2:127178/116‑1 (MQ=37)                                                                                                                         ccGGATGGCCAAAACCTTCCGGGGATTTGGTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCa                       <  2:321501/149‑1 (MQ=255)                                                                                                                         ccGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCa                       >  1:43376/1‑149 (MQ=255)                                                                                                                                gCAAAAACCTTCCGGGGATTTTTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGACTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCaggt                <  1:491556/149‑1 (MQ=255)                                                                                                                                    aaaCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCaggtaggt            >  2:249404/1‑149 (MQ=255)                                                                                                                                        cTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGa        >  1:600646/1‑149 (MQ=255)                                                                                                                                          tCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTTGAGGTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGAAc      <  2:50907/149‑1 (MQ=255)                                                                                                                                              gggATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGAACCGGt  <  2:600646/149‑1 (MQ=255)                                                                                                                                              gggATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGAACCGGt  <  1:362238/149‑1 (MQ=255)                                                                                                                                              gggATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCAGTTGGTCTTCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGAACCGGt  <  1:360013/149‑1 (MQ=255)                                                                                                                                                     gTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGa                                                                                                 >  2:139999/1‑47 (MQ=255)                                                                                                                                                     gTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGa                                                                                                 <  1:139999/47‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              AACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCATGGATGGCTGTTCAGGATGTTCATCCTGCAATTCGCTACTTAGCTGGGCTTCAGCCAGGTAGGTATGAACCGGT  >  NC_000913_3_hsa_tpiA/1028247‑1028536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.