mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 27.3% | 137.7 / 66.4 | 100 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 72 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 4168323 | 35 (0.590) | 7 (0.130) | 7/260 | 6.4 | 19.6% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913_3_hsa_tpiA | = 4168345 | 25 (0.450) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2729443 = | 21 (0.350) | 7 (0.130) | 7/260 | 6.4 | 21.1% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913_3_hsa_tpiA | = 4168313 | 33 (0.600) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4542672 | 44 (0.740) | 7 (0.130) | 6/262 | 7.0 | 14.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | = 4542968 | 40 (0.720) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4171821 = | 47 (0.790) | 6 (0.110) | 5/262 | 7.5 | 11.2% | intergenic (+83/‑218) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913_3_hsa_tpiA | 4171844 = | 51 (0.920) | intergenic (+106/‑195) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4040719 = | 65 (1.100) | 6 (0.110) | 5/262 | 7.5 | 9.7% | intergenic (+83/+187) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_hsa_tpiA | 4171844 = | 51 (0.920) | intergenic (+106/‑195) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3423340 | 64 (1.080) | 6 (0.110) | 5/262 | 7.5 | 9.8% | intergenic (+146/+83) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_hsa_tpiA | 4171844 = | 51 (0.920) | intergenic (+106/‑195) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1357215 = | 65 (1.100) | 5 (0.090) | 5/262 | 7.5 | 8.2% | intergenic (‑105/+208) | sapA/ymjA | antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein |
| ? | NC_000913_3_hsa_tpiA | 1357246 = | 51 (0.920) | intergenic (‑136/+177) | sapA/ymjA | antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2977673 | 62 (1.050) | 5 (0.090) | 5/268 | 7.6 | 7.7% | coding (1227/1263 nt) | lysA | diaminopimelate decarboxylase, PLP‑binding |
| ? | NC_000913_3_hsa_tpiA | = 2977698 | 60 (1.060) | coding (1202/1263 nt) | lysA | diaminopimelate decarboxylase, PLP‑binding | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2729475 = | 24 (0.400) | 4 (0.070) | 4/260 | 8.0 | 14.5% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | = 4168345 | 25 (0.450) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2729443 = | 21 (0.350) | 4 (0.070) | 4/260 | 8.0 | 15.8% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913_3_hsa_tpiA | 2729485 = | 23 (0.420) | intergenic (‑41/+131) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||