New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1961824	55 (0.950)	5 (0.090)	5/258	7.0	8.9%	intergenic (+29/‑148)	argS/yecT	arginyl‑tRNA synthetase/uncharacterized protein
	?	NC_000913_3_hsa_tpiA	= 1961834	51 (0.950)					intergenic (+39/‑138)	argS/yecT	arginyl‑tRNA synthetase/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTCAGCGCAGAAAACGAAGAAGTGCGTAACAGCCGTCTAAAACTGGCACAACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACGATAACGGTTGAATTTAA  >  NC_000913_3_hsa_tpiA/1961678‑1961960                                                                                                                                                   |                                                                                                                                         ccTTAGCGCAGAAAACGAAGAAGTGCCGAACAGCCGCCTAACATTGGCACAACGGGGGGCTGAGACGCTGAAGCTAGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAgg                                                                                                                                       <  2:774637/150‑1 (MQ=255)   tCAGCGCAGAAAACGAAGAAGTGCGTAACAGCCGTCTAAAACTGGCACAACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGt                                                                                                                                     <  2:78843/150‑1 (MQ=255)    cAGCGCAGAGAACGAAGAAGTGCGTAACAGCCGTCTAAAACTGGCACAAGTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGtt                                                                                                                                    <  2:577200/150‑1 (MQ=255)             aaaCGAAGAAGTCCGTAACAGCCGGCTAAAACCGACACAACTGACCGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTCTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCa                                                                                                                           <  2:356773/150‑1 (MQ=255)               aCGAAGAAGTGCGTAACAGCCGTCTAAAACTGGCACAACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAgg                                                                                                                         <  2:909435/150‑1 (MQ=255)                cGAAGAAGTGCGTAACAGCCGTCTAAAACTGGCACAACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGACGGCTGAGCAGGGTTAGCCGATCAGGc                                                                                                                        >  1:493545/1‑150 (MQ=255)                  aagaagTGCGTAACAGCCGTCTAAAACTGGCACAACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCtt                                                                                                                      <  2:177698/150‑1 (MQ=255)                    gaagTGCGTAACAGCCGTCTAAAACTGGCACAACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGACACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCtttt                                                                                                                    <  1:779702/150‑1 (MQ=255)                         gCGTAACAGCCGTCTAAAACTGGCACAACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTAtt                                                                                                               <  2:999637/150‑1 (MQ=255)                         gCGTAACAGCCGTCTAAAACTGGCACAACGGAAGGCGAAGACGCTGAAGCTGGGTCTGGCTACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTAtt                                                                                                               <  2:893721/150‑1 (MQ=255)                          cGTAACAGCCGTCTAAAACTGGCACAACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTg                                                                                                              <  1:43889/150‑1 (MQ=255)                                    ggcTAAAACTGGCACAACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAAt                                                                                                    <  2:844381/148‑1 (MQ=255)                                         aaaCTGGCACAACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTAtt                                                                                               <  1:528432/150‑1 (MQ=255)                                         aaaCTGGCACAACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTAtt                                                                                               >  2:760792/1‑150 (MQ=255)                                         aaaCTGGCACAACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTAtt                                                                                               <  2:579572/150‑1 (MQ=255)                                                  caACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTCGCGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATg                                                                                      >  1:662263/1‑150 (MQ=255)                                                   aaCTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATgg                                                                                     >  1:224975/1‑150 (MQ=255)                                                             gAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTACATGTATGATCAAAATAGACATTCCttt                                                                           >  2:987381/1‑150 (MQ=255)                                                                gACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGtt                                                                        <  2:1008872/150‑1 (MQ=255)                                                                   gCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTtc                                                                     >  1:403624/1‑150 (MQ=255)                                                                        aGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTACGTGAGCGTGAAGCTTGATCAGGGTTAGCCGATCCGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACt                                                                <  2:779073/150‑1 (MQ=255)                                                                          cTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGCCCAGGCTTTTCAATTGGCAGCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGt                                                              >  2:732052/1‑150 (MQ=255)                                                                               tCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTCCTGGCCCGCCAGCGTGAGTGACGACCGTTTAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGAt                                                         >  1:758421/1‑150 (MQ=255)                                                                               tCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGAt                                                         >  2:914493/1‑150 (MQ=255)                                                                                 tGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATaa                                                       <  1:766972/150‑1 (MQ=255)                                                                                 tGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATaa                                                       >  1:952960/1‑150 (MQ=255)                                                                                   gATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAaga                                                     >  1:230265/1‑150 (MQ=255)                                                                                   gATACGCTGGGTATTGAGACTGTAGAGCGTATGGAATCGATTTTTCGTGAGATTATAGCCGGATCAGGGTTATCCGATCAGGCTTTTGTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAaga                                                     <  1:195696/150‑1 (MQ=255)                                                                                   gATACGCTGGGGATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGTTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCGATTGTTTTCTCACTGTTGGATAaga                                                     <  2:887738/150‑1 (MQ=255)                                                                                    aTACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAagag                                                    >  1:922782/1‑150 (MQ=255)                                                                                      aCGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGc                                                  <  1:947944/150‑1 (MQ=255)                                                                                      aCGCAGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTTCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGc                                                  <  1:712926/150‑1 (MQ=255)                                                                                           gggTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATaa                                                       >  1:986670/1‑140 (MQ=255)                                                                                           gggTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATaa                                                       <  2:986670/140‑1 (MQ=255)                                                                                             ggtgtGAGACTGTAGAGCGTATGTAATCCATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTGTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGc                                           <  2:152416/146‑1 (MQ=255)                                                                                                  gagaCTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGCAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCAAGAGGCGTAat                                      >  1:545997/1‑150 (MQ=255)                                                                                                   agaCTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAata                                     >  2:353400/1‑150 (MQ=255)                                                                                                      cTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATcc                                  <  2:922782/150‑1 (MQ=255)                                                                                                       tGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAAt                                                                                                    >  2:56569/1‑83 (MQ=255)                                                                                                       tGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAAt                                                                                                    <  1:56569/83‑1 (MQ=255)                                                                                                       tGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCg                                 <  1:533077/150‑1 (MQ=255)                                                                                                        gTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCgg                                <  2:493545/150‑1 (MQ=255)                                                                                                        gTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCgg                                >  1:49201/1‑150 (MQ=255)                                                                                                          agagCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCAATTGTTTTCTCACTGTTGGATAGGAGGCCAGAAGCGTAATATCCGGcc                              >  1:136592/1‑150 (MQ=255)                                                                                                           gagCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGACATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATACGGgcc                             >  1:472103/1‑150 (MQ=255)                                                                                                             gCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCa                           <  1:760792/150‑1 (MQ=255)                                                                                                              cGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTg                                                                          >  1:504549/1‑102 (MQ=255)                                                                                                              cGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTg                                                                          <  2:504549/102‑1 (MQ=255)                                                                                                                    tAAGCGATTTTTCGTGAGAGTGAAGCCTGATCACGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAAc                    <  1:457176/150‑1 (MQ=255)                                                                                                                     aaTCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACg                   <  2:224975/150‑1 (MQ=255)                                                                                                                      aTCGATTTTTCGTGAGAGTGAAGCCTGATCCGGGTTAGCGGATCAGGCTTTTTTATTGCCATCTAGATGTATTCGGAAAATGGACGTGCCAGTGTGTGCTCGCTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACGa                  <  2:758421/150‑1 (MQ=255)                                                                                                                                  tGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTATGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACGATAACGGTTGAAt      >  2:387/1‑150 (MQ=255)                                                                                                                                      agTGAAGCCTGATCAGGGTTTGCCGATCATTGTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACGATAACGGTTGAATTTaa  <  2:472103/150‑1 (MQ=255)                                                                                                                                      agTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCTGGCCCCAAGGAAACGATAACGGTTGCATTTat  >  2:509630/1‑149 (MQ=255)                                                                                                                                      agTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTCTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACGATAACGGTTGAATTTaa  <  2:79159/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                         CCTCAGCGCAGAAAACGAAGAAGTGCGTAACAGCCGTCTAAAACTGGCACAACTGACGGCGAAGACGCTGAAGCTGGGTCTGGATACGCTGGGTATTGAGACTGTAGAGCGTATGTAATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCTTTTTTATTGCCATCTAAATGTATTCTGAAAATGGACATGCCATTGTTTTCTCACTGTTGGATAAGAGGCCAGAAGCGTAATATCCGGCCCCAGGGAAACGATAACGGTTGAATTTAA  >  NC_000913_3_hsa_tpiA/1961678‑1961960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.