New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 3255287	NA (NA)	4 (0.120)	4/268	4.3	NA	noncoding (71/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_hsa_tpiA	= 3255319	NA (NA)					noncoding (103/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

AGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGAC  >  NC_000913_3_hsa_tpiA/3255146‑3255431                                                                                                                                              |                                                                                                                                                 agcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGCAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACCACCCGTACGCCggcc                                                                                                                                           >  2:47369/1‑147 (MQ=255)  gcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACa                                                                                                                                          >  2:349295/1‑149 (MQ=255)   cTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCGATTAACATTAACGAATTAAACAACCCGTAGGCCGGACaa                                                                                                                                         >  1:515848/1‑149 (MQ=255)      gAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGAt                                                                                                                                      >  2:374968/1‑149 (MQ=255)        aGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGCTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAACCAACCCGTAGCCCGGACAAGAtcc                                                                                                                                    >  2:101042/1‑147 (MQ=255)          cTATCGTCGCGGAGTGTGAAACGCGTGTAGCCGAGGATGAAGCGACCGCCAAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTGATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATgcgc                                                                                                                                  <  2:33724/149‑1 (MQ=255)                                  gTTTAGCCGAGGATGAAGCTACCGCGAAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAAATGCGCCAGCATCGCATCCGGCACGATccc                                                                                                          >  2:324145/1‑149 (MQ=255)                                        ccGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcat                                                                                                                            >  1:176105/1‑125 (MQ=255)                                        ccGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcat                                                                                                                            <  2:176105/125‑1 (MQ=255)                                        ccGAGGATGAAGCTACCGCGTAAAGACAGGTTGACGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAAc                                                                                                    <  1:372049/149‑1 (MQ=255)                                                gAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGtt                                                                                            >  1:603380/1‑149 (MQ=255)                                                        cgcgTAAAGACAGGTTGCCGGATGTGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGc                                                                                    >  2:239033/1‑149 (MQ=255)                                                        cgcgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGc                                                                                    <  2:199587/149‑1 (MQ=255)                                                          cgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCt                                                                                  >  2:583420/1‑149 (MQ=255)                                                             aaaGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCAGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGc                                                                               <  1:541146/149‑1 (MQ=255)                                                               aGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTc                                                                             <  1:49703/149‑1 (MQ=255)                                                                gACAGGTTGCCGGAGGGGGTGAAAACGCCTTACCCGGCCTACAAAATCCACCAACACTAACGAATTAAACAACCCGTAGGCCTGACAAGATGCGCCAGGATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCGTTGCTCg                                                                            <  2:98631/149‑1 (MQ=255)                                                                 aCAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGCTTATCTGGCCTTTCTCGc                                                                           >  1:596653/1‑149 (MQ=255)                                                                   aGGTTGGGGGCTGCGGCGAAAACGCCTTAGCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCGCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCa                                                                         <  2:599692/149‑1 (MQ=39)                                                                     gTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCTTACCATCCGGCACGACCACGACACCCTGGGGTTCGCAGGGCCTTGCTCTCCATa                                                                       >  1:12343/1‑149 (MQ=25)                                                                          cGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAAtctc                                                                  <  2:350371/149‑1 (MQ=255)                                                                           ggATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCg                                                                 <  1:253787/149‑1 (MQ=255)                                                                              gccggctAAAGCGCCCTAACCTGCATACAAACTCCAAAAACATTAACGAATGAAAGAACACGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTAACTGGCCTTGCTCGCCATAATCTCGATa                                                              <  2:67966/147‑1 (MQ=37)                                                                                 ggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATc                                                           <  1:323145/149‑1 (MQ=255)                                                                                    gAAAACGCCTTATCCGGCCTACAAAATCCAACCACATTAAAGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGc                                                        <  1:244497/149‑1 (MQ=255)                                                                                        aCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGAt                                                    >  1:342962/1‑149 (MQ=255)                                                                                                  cGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtgctg                                          >  2:592080/1‑149 (MQ=255)                                                                                                   ggCCTACCAAATCCAACAACATTAACGAATTAAACAACCCGTAGCCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTCCTCGCCATACTCTCCCGAATCTGCCGATCCGTTtgctac                                         >  2:435619/1‑147 (MQ=38)                                                                                                   ggCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCAATATTCTCGATAATCTGCCCACCCGTttgttga                                         >  2:435116/1‑148 (MQ=39)                                                                                                      cTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATc                                      >  1:615873/1‑149 (MQ=255)                                                                                                             aTCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCCGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATACTCTCGTTAATCTGCCGATCGGTTTGCTGCATCGacttgc                               >  1:556553/1‑144 (MQ=255)                                                                                                                caacaaCATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTg                            >  1:368145/1‑149 (MQ=255)                                                                                                                 aacaacATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGc                           >  1:91504/1‑149 (MQ=255)                                                                                                                             gAATTAAACCACCCGTAGGCCGGACAAGATGCGCTAGCATCGCATCCGGCACGATCCCCAAATCCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAg               <  1:418654/149‑1 (MQ=255)                                                                                                                                ttAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGtt            <  1:374968/149‑1 (MQ=255)                                                                                                                                    acaacCCGTAGGCCGGACAAGAGGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTGGCTAACGCACACAGGTTGGCa        <  2:448739/149‑1 (MQ=255)                                                                                                                                         ccGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCGCGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGa   >  2:546114/1‑149 (MQ=255)                                                                                                                                         ccGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGa   >  1:67009/1‑149 (MQ=255)                                                                                                                                          cGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAACCgcc  >  1:127192/1‑147 (MQ=255)                                                                                                                                              |                                                                                                                                                 AGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGAC  >  NC_000913_3_hsa_tpiA/3255146‑3255431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.