New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 3255287	NA (NA)	4 (0.120)	4/268	4.3	NA	noncoding (71/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_hsa_tpiA	= 3255319	NA (NA)					noncoding (103/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCG  >  NC_000913_3_hsa_tpiA/3255179‑3255467                                                                                                                                             |                                                                                                                                                     gTTTAGCCGAGGATGAAGCTACCGCGAAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAAATGCGCCAGCATCGCATCCGGCACGATccc                                                                                                                                              >  2:324145/1‑149 (MQ=255)       ccGAGGATGAAGCTACCGCGTAAAGACAGGTTGACGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAAc                                                                                                                                        <  1:372049/149‑1 (MQ=255)               gAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGtt                                                                                                                                >  1:603380/1‑149 (MQ=255)                       cgcgTAAAGACAGGTTGCCGGATGTGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGc                                                                                                                        >  2:239033/1‑149 (MQ=255)                       cgcgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGc                                                                                                                        <  2:199587/149‑1 (MQ=255)                         cgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCt                                                                                                                      >  2:583420/1‑149 (MQ=255)                            aaaGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCAGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGc                                                                                                                   <  1:541146/149‑1 (MQ=255)                              aGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTc                                                                                                                 <  1:49703/149‑1 (MQ=255)                               gACAGGTTGCCGGAGGGGGTGAAAACGCCTTACCCGGCCTACAAAATCCACCAACACTAACGAATTAAACAACCCGTAGGCCTGACAAGATGCGCCAGGATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCGTTGCTCg                                                                                                                <  2:98631/149‑1 (MQ=255)                                aCAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGCTTATCTGGCCTTTCTCGc                                                                                                               >  1:596653/1‑149 (MQ=255)                                  aGGTTGGGGGCTGCGGCGAAAACGCCTTAGCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCGCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCa                                                                                                             <  2:599692/149‑1 (MQ=39)                                    gTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCTTACCATCCGGCACGACCACGACACCCTGGGGTTCGCAGGGCCTTGCTCTCCATa                                                                                                           >  1:12343/1‑149 (MQ=25)                                         cGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAAtctc                                                                                                      <  2:350371/149‑1 (MQ=255)                                          ggATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCg                                                                                                     <  1:253787/149‑1 (MQ=255)                                             gccggctAAAGCGCCCTAACCTGCATACAAACTCCAAAAACATTAACGAATGAAAGAACACGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTAACTGGCCTTGCTCGCCATAATCTCGATa                                                                                                  <  2:67966/147‑1 (MQ=37)                                                ggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATc                                                                                               <  1:323145/149‑1 (MQ=255)                                                   gAAAACGCCTTATCCGGCCTACAAAATCCAACCACATTAAAGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGc                                                                                            <  1:244497/149‑1 (MQ=255)                                                       aCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGAt                                                                                        >  1:342962/1‑149 (MQ=255)                                                                 cGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtgctg                                                                              >  2:592080/1‑149 (MQ=255)                                                                  ggCCTACCAAATCCAACAACATTAACGAATTAAACAACCCGTAGCCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTCCTCGCCATACTCTCCCGAATCTGCCGATCCGTTtgctac                                                                             >  2:435619/1‑147 (MQ=38)                                                                  ggCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCAATATTCTCGATAATCTGCCCACCCGTttgttga                                                                             >  2:435116/1‑148 (MQ=39)                                                                     cTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATc                                                                          >  1:615873/1‑149 (MQ=255)                                                                            aTCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCCGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATACTCTCGTTAATCTGCCGATCGGTTTGCTGCATCGacttgc                                                                   >  1:556553/1‑144 (MQ=255)                                                                               caacaaCATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTg                                                                >  1:368145/1‑149 (MQ=255)                                                                                aacaacATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGc                                                               >  1:91504/1‑149 (MQ=255)                                                                                            gAATTAAACCACCCGTAGGCCGGACAAGATGCGCTAGCATCGCATCCGGCACGATCCCCAAATCCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAg                                                   <  1:418654/149‑1 (MQ=255)                                                                                               ttAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGtt                                                <  1:374968/149‑1 (MQ=255)                                                                                                   acaacCCGTAGGCCGGACAAGAGGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTGGCTAACGCACACAGGTTGGCa                                            <  2:448739/149‑1 (MQ=255)                                                                                                        ccGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCGCGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGa                                       >  2:546114/1‑149 (MQ=255)                                                                                                        ccGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGa                                       >  1:67009/1‑149 (MQ=255)                                                                                                         cGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAACCgcc                                      >  1:127192/1‑147 (MQ=255)                                                                                                              gCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTc                                 <  1:349295/149‑1 (MQ=255)                                                                                                                  gACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAAt                                                                      >  2:77570/1‑108 (MQ=255)                                                                                                                  gACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAAt                                                                      <  1:77570/108‑1 (MQ=255)                                                                                                                  gACAACATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTTGATAATCGGCCGATCCGTTTGCTGCATCGCATGTGTGGCTAACGCACACAGGTTGGCAATCGACTGCTCAAca                             <  1:523979/149‑1 (MQ=255)                                                                                                                     aaGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAAcatca                          <  1:1373/149‑1 (MQ=255)                                                                                                                        aggcgcCAGCAGCGCATCCGGCACGAGCCCCAAAACCTGGCGTTTATCGGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATgc                       <  1:101042/147‑1 (MQ=255)                                                                                                                          gcgcaggcatcgcctcCGGCACGATCCCCAAAACCTTGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCGGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATgcgc                     <  2:520642/143‑1 (MQ=255)                                                                                                                            gcCAGCATCGCATCCGGCACGGTCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATgcgcta                   <  2:109443/149‑3 (MQ=255)                                                                                                                              cAGCATCGCATCCGGCCCAATCCCCAAAACCTGGCGTTTATTTTGCCTTGCTCGCCATAATCTCCATAATCTGCCGATCCGTTTGCTGCATCGAATAGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACCTCCTGCGCccca                 >  2:161526/1‑149 (MQ=255)                                                                                                                                   tcgcatcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATccc            <  1:592080/149‑1 (MQ=255)                                                                                                                                   tcgcatcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATccc            >  2:162937/1‑149 (MQ=255)                                                                                                                                     gcatcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCg                                                                                          >  1:70777/1‑69 (MQ=255)                                                                                                                                     gcatcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCg                                                                                          <  2:70777/69‑1 (MQ=255)                                                                                                                                     cccatctgCACGATCCGAAAAACCTGGCGTTTATCTGGCCTTGCTTGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCATGCCAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCtt          <  2:290647/142‑1 (MQ=255)                                                                                                                                      catcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTc         <  2:67009/149‑1 (MQ=255)                                                                                                                                         ccGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCAtt      <  2:603380/149‑1 (MQ=255)                                                                                                                                         ccGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCAtt      <  2:91504/149‑1 (MQ=255)                                                                                                                                            gCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGcc   <  1:69611/149‑1 (MQ=255)                                                                                                                                             cACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCagatcgg  >  1:290647/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                                     GTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCG  >  NC_000913_3_hsa_tpiA/3255179‑3255467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.