New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 3255287NA (NA)4 (0.120) 4/268 4.3 NA noncoding (71/103 nt) REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913_3_hsa_tpiA = 3255319 NA (NA)noncoding (103/103 nt) REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCG  >  NC_000913_3_hsa_tpiA/3255179‑3255467
                                                                                                                                            |                                                                                                                                                    
gTTTAGCCGAGGATGAAGCTACCGCGAAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAAATGCGCCAGCATCGCATCCGGCACGATccc                                                                                                                                              >  2:324145/1‑149 (MQ=255)
      ccGAGGATGAAGCTACCGCGTAAAGACAGGTTGACGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAAc                                                                                                                                        <  1:372049/149‑1 (MQ=255)
              gAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGtt                                                                                                                                >  1:603380/1‑149 (MQ=255)
                      cgcgTAAAGACAGGTTGCCGGATGTGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGc                                                                                                                        >  2:239033/1‑149 (MQ=255)
                      cgcgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGc                                                                                                                        <  2:199587/149‑1 (MQ=255)
                        cgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCt                                                                                                                      >  2:583420/1‑149 (MQ=255)
                           aaaGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCAGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGc                                                                                                                   <  1:541146/149‑1 (MQ=255)
                             aGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTc                                                                                                                 <  1:49703/149‑1 (MQ=255)
                              gACAGGTTGCCGGAGGGGGTGAAAACGCCTTACCCGGCCTACAAAATCCACCAACACTAACGAATTAAACAACCCGTAGGCCTGACAAGATGCGCCAGGATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCGTTGCTCg                                                                                                                <  2:98631/149‑1 (MQ=255)
                               aCAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGCTTATCTGGCCTTTCTCGc                                                                                                               >  1:596653/1‑149 (MQ=255)
                                 aGGTTGGGGGCTGCGGCGAAAACGCCTTAGCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCGCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCa                                                                                                             <  2:599692/149‑1 (MQ=39)
                                   gTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCTTACCATCCGGCACGACCACGACACCCTGGGGTTCGCAGGGCCTTGCTCTCCATa                                                                                                           >  1:12343/1‑149 (MQ=25)
                                        cGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAAtctc                                                                                                      <  2:350371/149‑1 (MQ=255)
                                         ggATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCg                                                                                                     <  1:253787/149‑1 (MQ=255)
                                            gccggctAAAGCGCCCTAACCTGCATACAAACTCCAAAAACATTAACGAATGAAAGAACACGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTAACTGGCCTTGCTCGCCATAATCTCGATa                                                                                                  <  2:67966/147‑1 (MQ=37)
                                               ggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATc                                                                                               <  1:323145/149‑1 (MQ=255)
                                                  gAAAACGCCTTATCCGGCCTACAAAATCCAACCACATTAAAGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGc                                                                                            <  1:244497/149‑1 (MQ=255)
                                                      aCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGAt                                                                                        >  1:342962/1‑149 (MQ=255)
                                                                cGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtgctg                                                                              >  2:592080/1‑149 (MQ=255)
                                                                 ggCCTACCAAATCCAACAACATTAACGAATTAAACAACCCGTAGCCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTCCTCGCCATACTCTCCCGAATCTGCCGATCCGTTtgctac                                                                             >  2:435619/1‑147 (MQ=38)
                                                                 ggCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCAATATTCTCGATAATCTGCCCACCCGTttgttga                                                                             >  2:435116/1‑148 (MQ=39)
                                                                    cTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATc                                                                          >  1:615873/1‑149 (MQ=255)
                                                                           aTCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCCGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATACTCTCGTTAATCTGCCGATCGGTTTGCTGCATCGacttgc                                                                   >  1:556553/1‑144 (MQ=255)
                                                                              caacaaCATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTg                                                                >  1:368145/1‑149 (MQ=255)
                                                                               aacaacATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGc                                                               >  1:91504/1‑149 (MQ=255)
                                                                                           gAATTAAACCACCCGTAGGCCGGACAAGATGCGCTAGCATCGCATCCGGCACGATCCCCAAATCCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAg                                                   <  1:418654/149‑1 (MQ=255)
                                                                                              ttAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGtt                                                <  1:374968/149‑1 (MQ=255)
                                                                                                  acaacCCGTAGGCCGGACAAGAGGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTGGCTAACGCACACAGGTTGGCa                                            <  2:448739/149‑1 (MQ=255)
                                                                                                       ccGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCGCGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGa                                       >  2:546114/1‑149 (MQ=255)
                                                                                                       ccGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGa                                       >  1:67009/1‑149 (MQ=255)
                                                                                                        cGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAACCgcc                                      >  1:127192/1‑147 (MQ=255)
                                                                                                             gCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTc                                 <  1:349295/149‑1 (MQ=255)
                                                                                                                 gACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAAt                                                                      >  2:77570/1‑108 (MQ=255)
                                                                                                                 gACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAAt                                                                      <  1:77570/108‑1 (MQ=255)
                                                                                                                 gACAACATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTTGATAATCGGCCGATCCGTTTGCTGCATCGCATGTGTGGCTAACGCACACAGGTTGGCAATCGACTGCTCAAca                             <  1:523979/149‑1 (MQ=255)
                                                                                                                    aaGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAAcatca                          <  1:1373/149‑1 (MQ=255)
                                                                                                                       aggcgcCAGCAGCGCATCCGGCACGAGCCCCAAAACCTGGCGTTTATCGGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATgc                       <  1:101042/147‑1 (MQ=255)
                                                                                                                         gcgcaggcatcgcctcCGGCACGATCCCCAAAACCTTGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCGGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATgcgc                     <  2:520642/143‑1 (MQ=255)
                                                                                                                           gcCAGCATCGCATCCGGCACGGTCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATgcgcta                   <  2:109443/149‑3 (MQ=255)
                                                                                                                             cAGCATCGCATCCGGCCCAATCCCCAAAACCTGGCGTTTATTTTGCCTTGCTCGCCATAATCTCCATAATCTGCCGATCCGTTTGCTGCATCGAATAGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACCTCCTGCGCccca                 >  2:161526/1‑149 (MQ=255)
                                                                                                                                  tcgcatcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATccc            <  1:592080/149‑1 (MQ=255)
                                                                                                                                  tcgcatcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATccc            >  2:162937/1‑149 (MQ=255)
                                                                                                                                    gcatcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCg                                                                                          >  1:70777/1‑69 (MQ=255)
                                                                                                                                    gcatcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCg                                                                                          <  2:70777/69‑1 (MQ=255)
                                                                                                                                    cccatctgCACGATCCGAAAAACCTGGCGTTTATCTGGCCTTGCTTGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCATGCCAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCtt          <  2:290647/142‑1 (MQ=255)
                                                                                                                                     catcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTc         <  2:67009/149‑1 (MQ=255)
                                                                                                                                        ccGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCAtt      <  2:603380/149‑1 (MQ=255)
                                                                                                                                        ccGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCAtt      <  2:91504/149‑1 (MQ=255)
                                                                                                                                           gCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGcc   <  1:69611/149‑1 (MQ=255)
                                                                                                                                            cACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCagatcgg  >  1:290647/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                                    
GTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCG  >  NC_000913_3_hsa_tpiA/3255179‑3255467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.