| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 2110440 = | 25 (0.640) | 3 (0.080) | 3/274 | 5.6 | 9.2% | coding (580/882 nt) | rfbA | glucose‑1‑phosphate thymidylyltransferase |
| ? | NC_000913_3_hsa_tpiA | 2110468 = | 35 (0.920) | coding (552/882 nt) | rfbA | glucose‑1‑phosphate thymidylyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGAACGCTATGGTGTCGTTGAGTTTGATAAAAACGGTACGGCAATCAGTCTGGAAGAAAAACCGTTAGAACCAAAGAGTAATTACGCCGTTACAGGTCTGTACTTTTATGATAACGACGTGGTTCAGATGGCGAAAAACTTGAAGCCGTCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_tpiA/2110592‑2110440‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgAACCACGTCGTTATCATAAAAGTACAGACCTGTAACGGCGTAATTACTCTTTGGTTCTAACGGTTTTTCTTCCAGACTGATTGCCGTACCGTTTTTA > NC_000913_3_hsa_tpiA/2110468‑2110564 CAGAACGCTATGGTGTCGTTGAGTTTGATAAAAACGGTACGGCAATCAGTCTGGAAGAAAAACCGTTAGAACCAAAGAGTAATTACGCCGTTACAGGTCTGTACTTTTATGATAACGACGTGGTTCAGATGGCGAAAAACTTGAAGCCGT < 1:489984/150‑1CAGAACGCTATGGTGTCGTTGAGTTTGATAAAAACGGTACGGCAATCAGTCTGGAAGAAAAACCGTTAGAACCAAAGAGTAATTACGCCGTTACAGGTCTGTACTTTTATGATAACGACGTGGTTCAGATGGCGAAAAACTTGAAGCCGT > 1:632453/1‑150 AGAACGCTATGGTGTCGTTGAGTTTGATAAAAACGGTACGGCAATCAGTCTGGAAGAAAAACCGTTAGAACCAAAGAGTAATTACGCCGTTACAGGTCTGTACTTTTATGATAACGACGTGGTTCAGCTGGCGAGAAACTTGAAGCCGTC > 1:468035/1‑150 GTACTTTTATGATAACGACGTGGTTCAGATGGCGCAAAACTTGAAGCCGTCTGAACCACGTCGTTATCATAAAAGTACAGACCTGTAACGGCGTAATTACTCTTTGGTTCTAACGGTTTTTCTTCCAGACTGATTGCCGTACCGTTTTTA > 2:198984/1‑150 TTCAGATGGCGAAAAACTTGAAGCCGTCTGAACCACGTCGTTATCATAAAAGTACAGACCTGTAACGGCGTAATTACTCTTTG < 1:453509/83‑1 TTCAGATGGCGAAAAACTTGAAGCCGTCTGAACCACGTCGTTATCATAAAAGTACAGACCTGTAACGGCGTAATTACTCTTTG > 2:453509/1‑83 CAGAACGCTATGGTGTCGTTGAGTTTGATAAAAACGGTACGGCAATCAGTCTGGAAGAAAAACCGTTAGAACCAAAGAGTAATTACGCCGTTACAGGTCTGTACTTTTATGATAACGACGTGGTTCAGATGGCGAAAAACTTGAAGCCGTCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_tpiA/2110592‑2110440‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgAACCACGTCGTTATCATAAAAGTACAGACCTGTAACGGCGTAATTACTCTTTGGTTCTAACGGTTTTTCTTCCAGACTGATTGCCGTACCGTTTTTA > NC_000913_3_hsa_tpiA/2110468‑2110564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |