New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 4266870 =NA (NA)5 (0.090) 5/266 7.5 NA noncoding (1/97 nt) RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913_3_hsa_tpiA 4266900 = NA (NA)noncoding (31/97 nt) RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

GTCATTTTATGGGGCGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCGCTCC  >  NC_000913_3_hsa_tpiA/4266727‑4267017
                                                                                                                                               |                                                                                                                                                   
gTCATTTTATGGGGCGAAGGTTTGCCCGTAGAACGTCTCGCAGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGa                                                                                                                                                >  1:511701/1‑149 (MQ=255)
gTCATTTTATGGGGCGAAGGTTTGCCCGTAGAACGTATTGCTTAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGa                                                                                                                                                >  1:511719/1‑149 (MQ=255)
        aTGGGGCGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTAGCGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATCCGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGt                                                                                                                                        <  1:761975/149‑1 (MQ=255)
        aTGGAGCGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGt                                                                                                                                        <  1:637551/149‑1 (MQ=255)
            ggCGGAGGTTTGCCCGTATAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAAt                                                                                                                                    <  1:1036244/149‑1 (MQ=255)
             gCGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGATTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATg                                                                                                                                   >  1:817175/1‑149 (MQ=255)
              cGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGc                                                                                                                                  <  2:283355/149‑1 (MQ=255)
                aaGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGCATGCCt                                                                                                                                >  1:269312/1‑149 (MQ=255)
                aaGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCt                                                                                                                                <  1:343021/149‑1 (MQ=255)
                   gTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCATGACATCAAGGGTCGCGATGAAAGACGTGAATTAACCGCTCTGTAATATTTGATTGTCTTTGCTGGCTGCAGCGTGAAAGGCTTAt                                                                                                                             >  2:986760/1‑149 (MQ=255)
                        cccGTAGAACGTATCGCTGAAATGACGAAAGTATGCGTTTTCGAACGTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGc                                                                                                                        <  1:807286/149‑1 (MQ=255)
                         ccGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGcc                                                                                                                       >  1:869354/1‑149 (MQ=255)
                            tAGAACGTATCGCTCAAAAGACGGAAGTAAGCGCTTACGAACTTATTACTCTCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAAt                                                                                                                    <  1:676581/149‑1 (MQ=255)
                              gAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTTTCCGGCCAATaa                                                                                                                  >  2:245416/1‑149 (MQ=255)
                               aaCGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCTGTCCAATaaa                                                                                                                 >  1:787309/1‑149 (MQ=255)
                                    aTCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCAGACTTCAAGGGGCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTGATCCGGCCAATAAAATCCt                                                                                                            >  1:467350/1‑149 (MQ=255)
                                       gCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTaaa                                                                                                         >  1:57030/1‑149 (MQ=255)
                                          gAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCACGATTTGCGATGAAATACGTGGATTAATCGTTCTGTAATATGTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAAt                                                                                                      <  1:238082/149‑1 (MQ=255)
                                           aaaTGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAAtt                                                                                                     >  2:780750/1‑149 (MQ=255)
                                           aaaTGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGACGGATGCGGCGTGAATGCCTTATCCGGCCCATAAAATGCTAAAAAtt                                                                                                     >  1:992572/1‑149 (MQ=255)
                                            aaTGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTc                                                                                                    <  2:894042/149‑1 (MQ=255)
                                                aggtaaGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCGTTATCCGGTCAATTACGTCCTAAAAATTCCATa                                                                                                >  2:445487/5‑149 (MQ=255)
                                                  gAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAg                                                                                              >  2:124007/1‑149 (MQ=255)
                                                   aaaGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCATCTATGTCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGt                                                                                             >  1:969714/1‑149 (MQ=255)
                                                    aaGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGtt                                                                                            >  2:329284/1‑149 (MQ=255)
                                                    aaGTAAGCGCGTACGAACTTATTAGGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGtt                                                                                            <  2:594237/149‑1 (MQ=255)
                                                      gttaGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGa                                                                                          <  2:333255/146‑1 (MQ=255)
                                                       tAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGAt                                                                                         >  2:514279/1‑149 (MQ=255)
                                                           cgcTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTc                                                                                     <  2:318326/149‑1 (MQ=255)
                                                                  gAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTTTAGTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATg                                                                              >  1:40491/1‑149 (MQ=255)
                                                                  gAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATg                                                                              >  1:486169/1‑149 (MQ=255)
                                                                  gAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATg                                                                              >  2:809416/1‑149 (MQ=255)
                                                                  gAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATg                                                                              >  1:36746/1‑149 (MQ=255)
                                                                     cTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGctc                                                                           <  2:57030/149‑1 (MQ=255)
                                                                     cTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGctc                                                                           <  2:90360/149‑1 (MQ=255)
                                                                                ccTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATCACGTCTGAAGTATTCTATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTc                                                                >  1:80883/1‑149 (MQ=255)
                                                                                 cTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGCTGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAACATTCAATCAGTTGATGTTCTTTCATGCTCTTATAAAGGTCg                                                               >  1:214275/1‑149 (MQ=255)
                                                                                    acgtCAAGGGTCGCGAGGAAATACGTGGATTAATCGTTCTGTAATATTTGAGTGCTTGTTCCGGATGCGGCGGGAATGCCTTAGCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGc                                                            <  2:189186/146‑1 (MQ=255)
                                                                                         aaGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTg                                                       >  1:358755/1‑149 (MQ=255)
                                                                                         aaGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTg                                                       >  1:369448/1‑149 (MQ=255)
                                                                                           gggTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGGTGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGc                                                     <  1:124007/149‑1 (MQ=255)
                                                                                              tCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGa                                                  <  2:36746/149‑1 (MQ=255)
                                                                                              tCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGa                                                  <  2:40491/149‑1 (MQ=255)
                                                                                                  gATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTa                                              >  1:665878/1‑149 (MQ=255)
                                                                                                             tGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATg                                   >  1:678267/1‑149 (MQ=255)
                                                                                                                    aTCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGACTGCCTTATCCGGCCCATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTTTGGCGGATGTACCTTTGTCATGAGTCTCa                            >  2:437275/1‑149 (MQ=255)
                                                                                                                       gTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCActc                         <  1:780750/149‑1 (MQ=255)
                                                                                                                         tCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTg                       >  2:356588/1‑149 (MQ=255)
                                                                                                                         tCTGTAATATGTGATTGTCCTTCCCGAACTCGGTTTGAATGCCTTAGCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTg                       <  2:214275/149‑1 (MQ=255)
                                                                                                                          cTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTTTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGt                      <  1:116674/149‑1 (MQ=255)
                                                                                                                          cTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGt                      <  2:598674/149‑1 (MQ=255)
                                                                                                                           tGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGtt                     <  2:817175/149‑1 (MQ=255)
                                                                                                                            gTAATCTTTGATTGTTTGGGCCGGAGTGGGCGTGAATGCCTTATCCGGCAAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTg                    <  2:467350/149‑1 (MQ=255)
                                                                                                                                tttttGATTGTCTGGGCCGGGTGCGGCGTGAATGCCTTATCCGGCCAATAAATTTCTAAAAATTCAATTAGTTGATGTTCTTTCATGCTCTTATAAAGGTTGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTaa                <  2:1015668/147‑1 (MQ=255)
                                                                                                                                tatTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCTTGAGTCTCACTCTGTTGCTag                >  2:249163/1‑148 (MQ=255)
                                                                                                                                          tCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCg      <  1:866293/149‑1 (MQ=255)
                                                                                                                                              tgCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCGCTcc  >  1:300632/1‑149 (MQ=255)
                                                                                                                                               |                                                                                                                                                   
GTCATTTTATGGGGCGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCGCTCC  >  NC_000913_3_hsa_tpiA/4266727‑4267017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.