New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 4266870 =NA (NA)5 (0.090) 5/266 7.5 NA noncoding (1/97 nt) RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913_3_hsa_tpiA 4266900 = NA (NA)noncoding (31/97 nt) RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

CCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCGCTCCTGAACATCCACTCGATCTTCGCCTTCTTCCG  >  NC_000913_3_hsa_tpiA/4266752‑4267048
                                                                                                                                                    |                                                                                                                                                    
ccGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGcc                                                                                                                                                      >  1:869354/1‑149 (MQ=255)
   tAGAACGTATCGCTCAAAAGACGGAAGTAAGCGCTTACGAACTTATTACTCTCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAAt                                                                                                                                                   <  1:676581/149‑1 (MQ=255)
     gAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTTTCCGGCCAATaa                                                                                                                                                 >  2:245416/1‑149 (MQ=255)
      aaCGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCTGTCCAATaaa                                                                                                                                                >  1:787309/1‑149 (MQ=255)
           aTCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCAGACTTCAAGGGGCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTGATCCGGCCAATAAAATCCt                                                                                                                                           >  1:467350/1‑149 (MQ=255)
              gCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTaaa                                                                                                                                        >  1:57030/1‑149 (MQ=255)
                 gAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCACGATTTGCGATGAAATACGTGGATTAATCGTTCTGTAATATGTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAAt                                                                                                                                     <  1:238082/149‑1 (MQ=255)
                  aaaTGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAAtt                                                                                                                                    >  2:780750/1‑149 (MQ=255)
                  aaaTGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGACGGATGCGGCGTGAATGCCTTATCCGGCCCATAAAATGCTAAAAAtt                                                                                                                                    >  1:992572/1‑149 (MQ=255)
                   aaTGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTc                                                                                                                                   <  2:894042/149‑1 (MQ=255)
                       aggtaaGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCGTTATCCGGTCAATTACGTCCTAAAAATTCCATa                                                                                                                               >  2:445487/5‑149 (MQ=255)
                         gAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAg                                                                                                                             >  2:124007/1‑149 (MQ=255)
                          aaaGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCATCTATGTCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGt                                                                                                                            >  1:969714/1‑149 (MQ=255)
                           aaGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGtt                                                                                                                           >  2:329284/1‑149 (MQ=255)
                           aaGTAAGCGCGTACGAACTTATTAGGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGtt                                                                                                                           <  2:594237/149‑1 (MQ=255)
                             gttaGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGa                                                                                                                         <  2:333255/146‑1 (MQ=255)
                              tAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGAt                                                                                                                        >  2:514279/1‑149 (MQ=255)
                                  cgcTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTc                                                                                                                    <  2:318326/149‑1 (MQ=255)
                                         gAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTTTAGTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATg                                                                                                             >  1:40491/1‑149 (MQ=255)
                                         gAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATg                                                                                                             >  1:486169/1‑149 (MQ=255)
                                         gAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATg                                                                                                             >  1:36746/1‑149 (MQ=255)
                                         gAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATg                                                                                                             >  2:809416/1‑149 (MQ=255)
                                            cTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGctc                                                                                                          <  2:90360/149‑1 (MQ=255)
                                            cTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGctc                                                                                                          <  2:57030/149‑1 (MQ=255)
                                                       ccTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATCACGTCTGAAGTATTCTATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTc                                                                                               >  1:80883/1‑149 (MQ=255)
                                                        cTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGCTGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAACATTCAATCAGTTGATGTTCTTTCATGCTCTTATAAAGGTCg                                                                                              >  1:214275/1‑149 (MQ=255)
                                                           acgtCAAGGGTCGCGAGGAAATACGTGGATTAATCGTTCTGTAATATTTGAGTGCTTGTTCCGGATGCGGCGGGAATGCCTTAGCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGc                                                                                           <  2:189186/146‑1 (MQ=255)
                                                                aaGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTg                                                                                      >  1:369448/1‑149 (MQ=255)
                                                                aaGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTg                                                                                      >  1:358755/1‑149 (MQ=255)
                                                                  gggTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGGTGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGc                                                                                    <  1:124007/149‑1 (MQ=255)
                                                                     tCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGa                                                                                 <  2:36746/149‑1 (MQ=255)
                                                                     tCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGa                                                                                 <  2:40491/149‑1 (MQ=255)
                                                                         gATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTa                                                                             >  1:665878/1‑149 (MQ=255)
                                                                                    tGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATg                                                                  >  1:678267/1‑149 (MQ=255)
                                                                                           aTCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGACTGCCTTATCCGGCCCATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTTTGGCGGATGTACCTTTGTCATGAGTCTCa                                                           >  2:437275/1‑149 (MQ=255)
                                                                                              gTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCActc                                                        <  1:780750/149‑1 (MQ=255)
                                                                                                tCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTg                                                      >  2:356588/1‑149 (MQ=255)
                                                                                                tCTGTAATATGTGATTGTCCTTCCCGAACTCGGTTTGAATGCCTTAGCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTg                                                      <  2:214275/149‑1 (MQ=255)
                                                                                                 cTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTTTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGt                                                     <  1:116674/149‑1 (MQ=255)
                                                                                                 cTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGt                                                     <  2:598674/149‑1 (MQ=255)
                                                                                                  tGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGtt                                                    <  2:817175/149‑1 (MQ=255)
                                                                                                   gTAATCTTTGATTGTTTGGGCCGGAGTGGGCGTGAATGCCTTATCCGGCAAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTg                                                   <  2:467350/149‑1 (MQ=255)
                                                                                                       tttttGATTGTCTGGGCCGGGTGCGGCGTGAATGCCTTATCCGGCCAATAAATTTCTAAAAATTCAATTAGTTGATGTTCTTTCATGCTCTTATAAAGGTTGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTaa                                               <  2:1015668/147‑1 (MQ=255)
                                                                                                       tatTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCTTGAGTCTCACTCTGTTGCTag                                               >  2:249163/1‑148 (MQ=255)
                                                                                                                 tCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCg                                     <  1:866293/149‑1 (MQ=255)
                                                                                                                     tgCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCGCTcc                                 >  1:300632/1‑149 (MQ=255)
                                                                                                                        cGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTAATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTGGCTCCTGa                              >  2:446892/1‑149 (MQ=255)
                                                                                                                                    gAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCGCTCCTGAACATCCACTCGa                  <  1:356588/149‑1 (MQ=255)
                                                                                                                                      aTGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCGCTCCTGAACATCCACTCGATc                <  1:329284/149‑1 (MQ=255)
                                                                                                                                          cTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCGCTCCTGAACATCCACTCGATCTTCg            <  2:269312/149‑1 (MQ=255)
                                                                                                                                            tATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGTCGCGGGCTGATGTCCAATGGGCATTAGTCTCACTCTGTTGCTAATTGCCGTTCGCTCCTGAACATCCACTCGATCTTCGcc          <  1:245416/149‑1 (MQ=255)
                                                                                                                                             aTCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCGCTCCTGAACATCCACTCGATCTTCGCct         <  2:619422/149‑1 (MQ=255)
                                                                                                                                              tCCGGCTAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCGCTCCTGAACATCCACTCGATCTTCGCctt        <  1:887022/149‑1 (MQ=255)
                                                                                                                                                 ggCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCGCTCCTGAACATCCACTCGATCTTCGCcttctt     >  2:888314/1‑149 (MQ=255)
                                                                                                                                                    cAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCGCTCCTGAACATCCACTCGATCTTCGCCTTCTTCCg  <  1:809416/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGTTCGCTCCTGAACATCCACTCGATCTTCGCCTTCTTCCG  >  NC_000913_3_hsa_tpiA/4266752‑4267048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.