New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 2455060	48 (1.010)	5 (0.110)	5/260	5.7	10.1%	intergenic (‑59/+23)	yfcU/yfcV	pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein/putative fimbrial‑like adhesin protein
	?	NC_000913_3_hsa_tpiA	= 2455066	44 (0.990)					intergenic (‑65/+17)	yfcU/yfcV	pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein/putative fimbrial‑like adhesin protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGTCGTCTTCAGCCCAGACACTGCTATAACTCCCTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/2454904‑2455060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccatagcGACACTGCTATGGGGTATTTAAATGGATTTTGACCGAACAAGAATAAAAACGGATAAAAACGTGTATGCCTGACCATTCTCTTTTTCGATTACGGATTCTTCCGTGGTGCATTGCGCTGGCAATGTCAGGGAGTTATAGCAG  <  NC_000913_3_hsa_tpiA/2455066‑2454925                                                                                                                                                                                                                                                                                                             ATGTCCTCTTCAGCCCAGACACTGCTATAACCCCCTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATAC                                                                                                                                                        <  2:399115/149‑1   GTCGTCTTCAGCCCAGACACTGCTATAACTCCCTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCC                                                                                                                                                      <  2:572706/149‑1       TCTTCAGCCCAGACACTGCTATAACTCCCTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATA                                                                                                                                                  <  2:433121/149‑1                       TGCTATAACTCCCTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCGACACTGCTATGGG                                                                                                                                  <  1:85185/149‑1                                                                              AAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCGACACTGCTATGGGGTATTTAAATGGATTTTGACC                                                                                                             >  1:219076/1‑115                                                                              AAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCGACACTGCTATGGGGTATTTAAATGGATTTTGACC                                                                                                             <  2:219076/115‑1                                                                                                          TTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCGACACTGCTATGGGGT                                                                                                                                <  1:619355/68‑1                                                                                                          TTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCGACACTGCTATGGGGT                                                                                                                                >  2:619355/1‑68                                                                                                                                                        CATAGCGACACTGCTATGGGGTATTTAAATGGATTTTGACCGAACAAGAATAAAAACGGATAAAAACGTGTATGCCTGACCATTCTCTTTTTCGATTACGGATTCTTCCGTGGTGCATTGCGCTGGCAATGTCAGGGAGTTATAGCAG  >  1:531598/1‑148                                                                                                                                                        CATAGCGACACTGCTATGGGGTATTTAAATGGATTTTGACCGAACAAGAATAAAAACGGATAAAAACGTGTATGCCTGACCATTCTCTTTTTCGATTACGGATTCTTCCGTGGTGCATTGCGCTGGCAATGTCAGGGAGTTATAGCAG  <  2:531598/148‑1                                                                                                                                                                                                                                                                                                             ATGTCGTCTTCAGCCCAGACACTGCTATAACTCCCTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/2454904‑2455060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccatagcGACACTGCTATGGGGTATTTAAATGGATTTTGACCGAACAAGAATAAAAACGGATAAAAACGTGTATGCCTGACCATTCTCTTTTTCGATTACGGATTCTTCCGTGGTGCATTGCGCTGGCAATGTCAGGGAGTTATAGCAG  <  NC_000913_3_hsa_tpiA/2455066‑2454925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.