New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 245506048 (1.010)5 (0.110) 5/260 5.7 10.1% intergenic (‑59/+23) yfcU/yfcV pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein/putative fimbrial‑like adhesin protein
?NC_000913_3_hsa_tpiA = 2455066 44 (0.990)intergenic (‑65/+17) yfcU/yfcV pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein/putative fimbrial‑like adhesin protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGCTATAACTCCCTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCTTCGCTTTGCCTTTATTAGTGGCAG  >  NC_000913_3_hsa_tpiA/2454925‑2455207
                                                                                                                                             |                                                                                                                                             
cTGCTATAACTCCCTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATg                                                                                                                                         >  2:531598/1‑148 (MQ=255)
cTGCTATAACTCCCTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATg                                                                                                                                         <  1:531598/148‑1 (MQ=255)
        aCTCCCTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGc                                                                                                                                >  1:744725/1‑149 (MQ=255)
         cTCCCTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTATATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGcc                                                                                                                               >  2:745568/1‑149 (MQ=255)
            ccTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAACCTCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTa                                                                                                                            <  2:771272/149‑1 (MQ=255)
            ccTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTa                                                                                                                            >  2:106178/1‑149 (MQ=255)
            ccTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTa                                                                                                                            <  2:478847/149‑1 (MQ=255)
              tGACATTGCCAGGGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATATTAGTGTCGCTATGGGGGTATGCCTTACa                                                                                                                          <  2:521240/149‑1 (MQ=255)
              tGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGGATTCCTTACa                                                                                                                          <  2:102125/149‑1 (MQ=255)
               gACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTc                                                                                                                                               <  1:503462/127‑1 (MQ=255)
               gACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTc                                                                                                                                               >  2:503462/1‑127 (MQ=255)
                  aTTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGgta                                                                                                                      >  1:167508/1‑149 (MQ=255)
                       cAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATACGGTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACTCCATAGCAGTGTCGCTATGGCGGTATGCCTTACAGgtaagtaa                                                                                                                 >  2:428364/1‑149 (MQ=255)
                           gcAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTACGGGCGTATGCCTTACAGGTAATTAATCTg                                                                                                             >  2:118826/1‑149 (MQ=255)
                                  accccGGAACCATCCTTAGTCCAAAAGTGGAATGGTTGTGAATAGACGTTTGTATTCGTTGTTATTCGTGTTCGGTCAAAATTCACTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAggtg                                                                                                      <  2:302476/149‑1 (MQ=255)
                                  accacGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAggtg                                                                                                      <  2:744725/149‑1 (MQ=255)
                                  accacGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAggtg                                                                                                      >  1:356269/1‑149 (MQ=255)
                                   ccacGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAggtgg                                                                                                     <  1:745568/149‑1 (MQ=255)
                                    cacGGAAGAAACCGAAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAggtggt                                                                                                    <  2:589713/149‑1 (MQ=255)
                                     acGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAgg                                                                                                                        <  2:544540/128‑1 (MQ=255)
                                     acGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAgg                                                                                                                        >  1:544540/1‑128 (MQ=255)
                                       ggAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTAtt                                                                                                 <  2:494498/149‑1 (MQ=255)
                                             aTCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTc                                                                                           >  1:678799/1‑149 (MQ=255)
                                             aTCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTc                                                                                           >  2:38102/1‑149 (MQ=255)
                                              tCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGa                                                                                         >  2:539278/1‑149 (MQ=255)
                                                cGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCGTAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGaa                                                                                        <  1:376087/149‑1 (MQ=255)
                                                cGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGaa                                                                                        >  2:347716/1‑149 (MQ=255)
                                                 gTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGaca                                                                                       >  1:604371/1‑147 (MQ=255)
                                                     tCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTAc                                                                                   <  2:823594/149‑1 (MQ=255)
                                                     tCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCCATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTAc                                                                                   <  2:76438/149‑1 (MQ=255)
                                                       gAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTAccc                                                                                 <  2:761575/149‑1 (MQ=255)
                                                                   ggTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCAt                                                                    <  1:539278/149‑1 (MQ=255)
                                                                     tCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATc                                                                   >  2:730813/1‑149 (MQ=255)
                                                                     tCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATc                                                                   <  2:167508/149‑1 (MQ=255)
                                                                               acGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCg                                                         >  2:185891/1‑149 (MQ=255)
                                                                                cGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGa                                                        >  2:326385/1‑149 (MQ=255)
                                                                                        tCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGAccagccag                                                >  1:244009/1‑149 (MQ=255)
                                                                                                     ttGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCa                                   <  1:106178/149‑1 (MQ=255)
                                                                                                     ttGTTCGGTCAAAAGCCATTTAAAGACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCa                                   >  1:728787/1‑149 (MQ=255)
                                                                                                               aaaaTCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCtt                         <  2:411561/149‑1 (MQ=255)
                                                                                                                aaaTCCATTTAAATACCCCATAGCAGTGTAGCTATGGGGACATGCCTTACAGGTAAGTAATCTGGAAGGTGGCATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAATCAGCTTc                        >  2:530678/1‑149 (MQ=255)
                                                                                                                     cATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCTTCGCttt                   <  2:537754/149‑1 (MQ=255)
                                                                                                                      aTTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCTTCGCTTTg                  >  2:156531/1‑149 (MQ=255)
                                                                                                                                 ccATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGATATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCTTCGCTTTGCCTTTATTAGt       <  2:728787/149‑1 (MQ=255)
                                                                                                                                 ccATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGGTCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCTTCGCTTTGCCTTTATTAGt       >  1:537361/1‑149 (MQ=255)
                                                                                                                                   aTAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCTTCGCTTTGCCTTTATTAGTgg     <  1:156531/149‑1 (MQ=255)
                                                                                                                                     aGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCTTCGCTTTGCCTTTATTAGTGGCa   <  1:185891/149‑1 (MQ=255)
                                                                                                                                      gCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCTTCGCTTTGCCTTTATTAGTGGCAg  >  2:426542/1‑149 (MQ=255)
                                                                                                                                             |                                                                                                                                             
CTGCTATAACTCCCTGACATTGCCAGCGCAATGCACCACGGAAGAATCCGTAATCGAAAAAGAGAATGGTCAGGCATACACGTTTTTATCCGTTTTTATTCTTGTTCGGTCAAAATCCATTTAAATACCCCATAGCAGTGTCGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCTTCGCTTTGCCTTTATTAGTGGCAG  >  NC_000913_3_hsa_tpiA/2454925‑2455207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.