| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 3827430 = | 19 (0.800) | 4 (0.180) | 4/270 | 2.7 | 17.0% | intergenic (+139/+30) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter |
| ? | NC_000913_3_hsa_tpiA | 3827452 = | 21 (0.930) | intergenic (+161/+8) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATGCGTAAAAGGCGGCAGTGAGAAGACCGCCATTTCAGGTTACCCTACCTTCCTGCCGGATGCGATTCATCACCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCATGTGCGACGGGC > NC_000913_3_hsa_tpiA/3827283‑3827572 | actGCGTAAAAGGCGGCAATGGGAAGGCCGCCATTTCAGGTTACCCTACCTTCTGGCCGGATGCGAGTCATCACCCTACAAATTCAGTAAATGATGAATCAATACGCAGGCTTGATAAGCTAAGCGCATCAGGCATTTGTCTTTGTTgc > 2:414742/3‑149 (MQ=255) gTGAGAAGACCGCCATTTCAGGTTACCCTACCTTCCTGCCGGATGCGATTCATCACCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTAccgcc > 1:245633/1‑149 (MQ=255) gctttggcccgtcgtacatggcgtttttggtggtgccgatggtcggtgcgttctttatcgatatcgtcaatgcgctggtaattaagttgtatttgatgttgccgatttttgccggttaaccgatgaaGCGGCGGCACTTCTACcgccgc > 2:340204‑M1/128‑149 (MQ=255) tgggccgccgcccttggtgtttttggtggtgccgatggtcggtgcgttctttatcgatatcgtcaatgcgctggtcattatgttgtatttggtgttgccgattcttgccggttaaccgatgaaGCGGCGGCACTTCTACCGCCGCTTCa > 2:239930‑M1/124‑149 (MQ=255) ccGCCATTTCAGGTTACCCTACCTTCCTGCCCCATGCGATTCATCACCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGGGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCg > 1:176840/1‑149 (MQ=255) atcaCCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCgg < 2:345282/126‑1 (MQ=255) atcaCCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCgg > 1:345282/1‑126 (MQ=255) atcaCCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGCCAACATCAAATACAACTTAATTa > 2:298434/1‑149 (MQ=255) tcaCCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTAc > 2:114051/1‑149 (MQ=255) tcaCCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTAc > 2:114747/1‑149 (MQ=255) ccTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAgc < 1:240576/149‑1 (MQ=255) aaaTAAATTATGAATCAATACGCAGGCTTGCGAACCGACGCCTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGa < 1:326004/148‑1 (MQ=255) tATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCACAAATCGGCCACATCAAATACAACTTAATTCCCAGCGCGTTGCCGATATCGagt > 2:278486/1‑147 (MQ=255) aaTCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGa > 1:235064/1‑149 (MQ=255) attaagttgtatttgatgttgccgatttttgccggttaaccgatgaaGCGGCGGCACTTCTACCGCCGCtt < 2:220011‑M1/24‑1 (MQ=255) attaagttgtatttgatgttgccgatttttgccggttaaccgatgaaGCGGCGGCACTTCTACCGCCGCtt > 1:220011‑M1/48‑71 (MQ=255) aGGCTTGATAAGCGAAGCGAATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAACAAACGgaccgacc > 2:69193/1‑149 (MQ=255) gcgaagcgTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCCAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGCCCATCGGcacccc > 2:202245/1‑147 (MQ=255) aagcgTATCAGGCATTTGTCTTTGTTGCGGCGGCGCTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCaa > 2:315301/1‑149 (MQ=255) gCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCAtgt > 2:278932/1‑149 (MQ=255) aTTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGAACCGACCATCGGCACCACCAAAGACGCAATCTGc > 2:395113/1‑149 (MQ=255) gTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCATGTGCGACg > 1:419302/1‑149 (MQ=255) tttGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCCCCGACCATCGGCACCACCAAAAACGCCATGTGCGACGGGc > 1:30438/1‑149 (MQ=255) | AATGCGTAAAAGGCGGCAGTGAGAAGACCGCCATTTCAGGTTACCCTACCTTCCTGCCGGATGCGATTCATCACCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCATGTGCGACGGGC > NC_000913_3_hsa_tpiA/3827283‑3827572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |