New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3827430 =	19 (0.800)	4 (0.180)	4/270	2.7	17.0%	intergenic (+139/+30)	recG/gltS	ATP‑dependent DNA helicase/glutamate transporter
	?	NC_000913_3_hsa_tpiA	3827452 =	21 (0.930)					intergenic (+161/+8)	recG/gltS	ATP‑dependent DNA helicase/glutamate transporter
Rejected: Frequency below/above cutoff threshold.

AGACCGCCATTTCAGGTTACCCTACCTTCCTGCCGGATGCGATTCATCACCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCAC‑CAAAAACGCCATGTGCGACGGGCCAAAGCGTTCAGTGATCG  >  NC_000913_3_hsa_tpiA/3827307‑3827590                                                                                                                                                  |                                                                                                                                            tgggccgccgcccttggtgtttttggtggtgccgatggtcggtgcgttctttatcgatatcgtcaatgcgctggtcattatgttgtatttggtgttgccgattcttgccggttaaccgatgaaGCGGCGGCACTTCTACCGCCGCTTCa                                                                                                                                          >  2:239930‑M1/124‑149 (MQ=255)    ccGCCATTTCAGGTTACCCTACCTTCCTGCCCCATGCGATTCATCACCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGGGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCg                                                                                                                                       >  1:176840/1‑149 (MQ=255)                                              atcaCCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCgg                                                                                                                    <  2:345282/126‑1 (MQ=255)                                              atcaCCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCgg                                                                                                                    >  1:345282/1‑126 (MQ=255)                                              atcaCCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGCCAACATCAAATACAACTTAATTa                                                                                             >  2:298434/1‑149 (MQ=255)                                               tcaCCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTAc                                                                                            >  2:114051/1‑149 (MQ=255)                                               tcaCCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTAc                                                                                            >  2:114747/1‑149 (MQ=255)                                                   ccTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAgc                                                                                        <  1:240576/149‑1 (MQ=255)                                                             aaaTAAATTATGAATCAATACGCAGGCTTGCGAACCGACGCCTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGa                                                                              <  1:326004/148‑1 (MQ=255)                                                                     tATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCACAAATCGGCCACATCAAATACAACTTAATTCCCAGCGCGTTGCCGATATCGagt                                                                      >  2:278486/1‑147 (MQ=255)                                                                         aaTCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGa                                                                  >  1:235064/1‑149 (MQ=255)                                                                             attaagttgtatttgatgttgccgatttttgccggttaaccgatgaaGCGGCGGCACTTCTACCGCCGCtt                                                                                                                                            <  2:220011‑M1/24‑1 (MQ=255)                                                                             attaagttgtatttgatgttgccgatttttgccggttaaccgatgaaGCGGCGGCACTTCTACCGCCGCtt                                                                                                                                            >  1:220011‑M1/48‑71 (MQ=255)                                                                                    aGGCTTGATAAGCGAAGCGAATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAACAAACGgaccgacc                                                       >  2:69193/1‑149 (MQ=255)                                                                                               gcgaagcgTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCCAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGCCCATCGGcacccc                                            >  2:202245/1‑147 (MQ=255)                                                                                                  aagcgTATCAGGCATTTGTCTTTGTTGCGGCGGCGCTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCAC‑Caa                                        >  2:315301/1‑149 (MQ=255)                                                                                                             gCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCAC‑CAAAAACGCCAtgt                             >  2:278932/1‑149 (MQ=255)                                                                                                               aTTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGAACCGACCATCGGCACCAC‑CAAAGACGCAATCTGc                           >  2:395113/1‑149 (MQ=255)                                                                                                                   gTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCAC‑CAAAAACGCCATGTGCGACg                       >  1:419302/1‑149 (MQ=255)                                                                                                                      tttGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCCCCGACCATCGGCACCAC‑CAAAAACGCCATGTGCGACGGGc                    >  1:30438/1‑149 (MQ=255)                                                                                                                        tgaagcggcggtagaagtgccgccgcTTCATCGGTTAACCGGCAAGAATCGGCAACACCAAATACAACATAATGACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCAC‑CAAAAACACCAAGGGCGGCGGCCCa                  >  2:239930‑M2/27‑149 (MQ=255)                                                                                                                          aagcggcggtagaagtgccgccgcTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAAt                                                                                               <  2:220011‑M2/47‑1 (MQ=255)                                                                                                                          aagcggcggtagaagtgccgccgcTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAAt                                                                                               >  1:220011‑M2/25‑71 (MQ=255)                                                                                                                            gcggcggtagaagtgccgccgcTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCAC‑CAAAAACGCCATGTACGACGGGCCAAAGc              >  2:340204‑M2/23‑149 (MQ=255)                                                                                                                                     cTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCAC‑CAAAAACGCCATGTGCGACGGGCCAAAGCGTTCAGTGa     <  1:114747/149‑1 (MQ=255)                                                                                                                                     cTTCGACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCAC‑CAAAAACGCCATGTGCGACGGGCCAAAGCGTTCAGTGa     <  1:114051/149‑1 (MQ=255)                                                                                                                                        cTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCGC‑CCAAACCGCCATGTGCGACCGGGCAACGCGCTCAGTCATCg  >  1:138911/1‑149 (MQ=255)                                                                                                                                        cTACCGCCGCATCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATAACCAGCGCATTGACGCTATCGATAAAGAAAGCACCCACCATCGGCACCACACAAAAAC‑CAATGTACGACGGACCAAAGCGGTCAGtagtag  >  2:76212/1‑144 (MQ=255)                                                                                                                                                  |                                                                                                                                            AGACCGCCATTTCAGGTTACCCTACCTTCCTGCCGGATGCGATTCATCACCCTACAAATTCAATAAATTATGAATCAATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCAC‑CAAAAACGCCATGTGCGACGGGCCAAAGCGTTCAGTGATCG  >  NC_000913_3_hsa_tpiA/3827307‑3827590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.