New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 287223	23 (0.970)	4 (0.170)	4/276	2.8	14.4%	coding (435/1611 nt)	yagH	CP4‑6 prophage; putative xylosidase/arabinosidase
	?	NC_000913_3_hsa_tpiA	= 287234	25 (1.080)					coding (446/1611 nt)	yagH	CP4‑6 prophage; putative xylosidase/arabinosidase
Rejected: Frequency below/above cutoff threshold.

AAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAAAACGCTGTTTACCGGCACGCCGCTCTGCTACACCGAAGGCGCGCACC  >  NC_000913_3_hsa_tpiA/287084‑287356                                                                                                                                            |                                                                                                                                       aaaaCGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCgcgc                                                                                                                              <  1:400062/149‑1 (MQ=255) aaaaCGGCCGCAACTTCCTCGGCACCGCGCCCTCCAGCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCgcgc                                                                                                                              <  2:326871/149‑1 (MQ=255)        tcgcctcTTCGTCGACAACGCGCCCTCCATCGAGGGGCCATGTAGTGTAACGATCCGGCTCGCCACCGGCTGGTTTCACCCTTCCCTCTTCCTCGACGACGCTGGCCGCAAATACTATCTCTTCCGCGCGTGGGGG‑CCGCGCCACcaca                                                                                                                       <  2:193934/143‑1 (MQ=255)         cGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAg                                                                                                                      >  1:102297/1‑149 (MQ=255)            aaCTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCCCGCCACCACAGCaa                                                                                                                   >  2:32665/1‑149 (MQ=255)               ttCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTCTATCTACCACCCGTGGGGG‑CCGCGCCCCCCCTGCAcccc                                                                                                                >  2:16600/1‑149 (MQ=255)                tCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCCCCACAGCCACCCg                                                                                                               >  2:207922/1‑149 (MQ=255)                   tCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCTGTGGtggcgcggcccccacggg                                                                                                                      >  2:375394‑M1/1‑122 (MQ=255)                   tCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCTGTGGtggcgcggcccccacggg                                                                                                                      <  1:375394‑M1/140‑19 (MQ=255)                      tCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGcaccac                                                                                                         >  1:253627/1‑149 (MQ=255)                               ccTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCgtg                                                                                                <  1:284757/149‑1 (MQ=255)                                cTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCCCCACAGCAACCCGCACAACACCATCgtgt                                                                                               >  2:388575/1‑149 (MQ=255)                                 tCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGtt                                                                                              >  1:227455/1‑149 (MQ=255)                                    aTCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACa                                                                                           <  1:18867/149‑1 (MQ=255)                                            gCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCAGTTCGACGGGGACTAGGTACGCAATACCGGGAGCAACCGCCCGTGGGGGTTCGTACC‑CGACTAGGACCCGCAGAACACCATCGTGTTACAGGCGTTTg                                                                                   >  1:413065/1‑149 (MQ=255)                                             ccATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTATGa                                                                                  <  2:179395/149‑1 (MQ=255)                                               aTGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTATAGGCGTTTGAcc                                                                                >  2:26216/1‑149 (MQ=255)                                                        gcCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATCTCTCCCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCCCAACACCATCGTGTTCCCGGCGTTTGACCCGCAGACCg                                                                       >  2:59772/1‑149 (MQ=255)                                                        gcCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGAAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCCCAGCAACCCGCGCAACACCATCGTGTTACAGGCGTTTGACCCGCCGAccc                                                                       >  1:40930/1‑148 (MQ=255)                                                                 gATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCCAACCGGCCCGccct                                                              >  1:279729/1‑149 (MQ=255)                                                                                     aCCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCCCAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAAAACGCTg                                          >  1:364956/1‑149 (MQ=255)                                                                                        cGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGGTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAAAACGCTGttt                                       <  1:291525/149‑1 (MQ=255)                                                                                              tGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGtggcgcggcccccacgggcggta                                                                                                                 <  2:155721‑M1/70‑24 (MQ=255)                                                                                              tGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGtggcgcggcccccacgggcggta                                                                                                                 >  1:155721‑M1/1‑47 (MQ=255)                                                                                                      gacgacgaTGGCCACAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAACACGCTGTTTACCGGCAcgccgcc                         >  1:146163/1‑148 (MQ=255)                                                                                                          acgaTGGCCGCAAATAATATATCTACCGCCCGTGCGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCGCGCCCGAGCGCAAAACGCTGTTTACCGGCACGCCGCTCTGc                     <  2:351767/149‑1 (MQ=255)                                                                                                                   gCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAAAACGCTGTTTACCGGCACGCCGCTCTGCTACACCGaa            <  1:277483/149‑1 (MQ=255)                                                                                                                                 tACCGCCCGTGGGGG‑CCGCGCCAccacgggcggtagatatagtatttgcggccatcgtcgtcgtggaaca                                                                             <  2:155721‑M2/70‑48 (MQ=255)                                                                                                                                 tACCGCCCGTGGGGG‑CCGCGCCAccacgggcggtagatatagtatttgcggccatcgtcgtcgtggaaca                                                                             >  1:155721‑M2/1‑23 (MQ=255)                                                                                                                                      cccGTGGGGG‑CCGCGCCAccacaggcggtagatatagtatttgcggccatcgtcgtcgtggaacagggacgggtcaaacccgccgttgcccatcgggattggctcgctccatggcccctcgatggagggcgcggtgacga  <  1:375394‑M2/140‑123 (MQ=255)                                                                                                                                      cccGTGGGGG‑CCGCGCCAccacaggcggtagatatagtatttgcggccatcgtcgtcgtggaacagggacgggtcaaacccgccgttgcccatcgggattggctcgctccatggcccctcgatggagggcgcggtgacga  >  2:375394‑M2/1‑18 (MQ=255)                                                                                                                                            |                                                                                                                                       AAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAAAACGCTGTTTACCGGCACGCCGCTCTGCTACACCGAAGGCGCGCACC  >  NC_000913_3_hsa_tpiA/287084‑287356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.