New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 287223	23 (0.970)	4 (0.170)	4/276	2.8	14.4%	coding (435/1611 nt)	yagH	CP4‑6 prophage; putative xylosidase/arabinosidase
	?	NC_000913_3_hsa_tpiA	= 287234	25 (1.080)					coding (446/1611 nt)	yagH	CP4‑6 prophage; putative xylosidase/arabinosidase
Rejected: Frequency below/above cutoff threshold.

CCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAAAACGCTGTTTACCGGCACGCCGCTCTGCTACACCGAAGGCGCGCACCTGTATCGCCACGCGGGATGGTACTAC  >  NC_000913_3_hsa_tpiA/287091‑287382                                                                                                                                                 |                                                                                                                                                     tcgcctcTTCGTCGACAACGCGCCCTCCATCGAGGGGCCATGTAGTGTAACGATCCGGCTCGCCACCGGCTGGTTTCACCCTTCCCTCTTCCTCGACGACGCTGGCCGCAAATACTATCTCTTCCGCGCGTGGGGG‑CCGCGCCACcaca                                                                                                                                                 <  2:193934/143‑1 (MQ=255)  cGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAg                                                                                                                                                >  1:102297/1‑149 (MQ=255)     aaCTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCCCGCCACCACAGCaa                                                                                                                                             >  2:32665/1‑149 (MQ=255)        ttCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTCTATCTACCACCCGTGGGGG‑CCGCGCCCCCCCTGCAcccc                                                                                                                                          >  2:16600/1‑149 (MQ=255)         tCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCCCCACAGCCACCCg                                                                                                                                         >  2:207922/1‑149 (MQ=255)               tCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGcaccac                                                                                                                                   >  1:253627/1‑149 (MQ=255)                        ccTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCgtg                                                                                                                          <  1:284757/149‑1 (MQ=255)                         cTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCCCCACAGCAACCCGCACAACACCATCgtgt                                                                                                                         >  2:388575/1‑149 (MQ=255)                          tCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGtt                                                                                                                        >  1:227455/1‑149 (MQ=255)                             aTCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACa                                                                                                                     <  1:18867/149‑1 (MQ=255)                                     gCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCAGTTCGACGGGGACTAGGTACGCAATACCGGGAGCAACCGCCCGTGGGGGTTCGTACC‑CGACTAGGACCCGCAGAACACCATCGTGTTACAGGCGTTTg                                                                                                             >  1:413065/1‑149 (MQ=255)                                      ccATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTATGa                                                                                                            <  2:179395/149‑1 (MQ=255)                                        aTGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTATAGGCGTTTGAcc                                                                                                          >  2:26216/1‑149 (MQ=255)                                                 gcCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATCTCTCCCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCCCAACACCATCGTGTTCCCGGCGTTTGACCCGCAGACCg                                                                                                 >  2:59772/1‑149 (MQ=255)                                                 gcCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGAAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCCCAGCAACCCGCGCAACACCATCGTGTTACAGGCGTTTGACCCGCCGAccc                                                                                                 >  1:40930/1‑148 (MQ=255)                                                          gATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCCAACCGGCCCGccct                                                                                        >  1:279729/1‑149 (MQ=255)                                                                              aCCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCCCAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAAAACGCTg                                                                    >  1:364956/1‑149 (MQ=255)                                                                                 cGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGGTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAAAACGCTGttt                                                                 <  1:291525/149‑1 (MQ=255)                                                                                               gacgacgaTGGCCACAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAACACGCTGTTTACCGGCAcgccgcc                                                   >  1:146163/1‑148 (MQ=255)                                                                                                   acgaTGGCCGCAAATAATATATCTACCGCCCGTGCGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCGCGCCCGAGCGCAAAACGCTGTTTACCGGCACGCCGCTCTGc                                               <  2:351767/149‑1 (MQ=255)                                                                                                            gCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAAAACGCTGTTTACCGGCACGCCGCTCTGCTACACCGaa                                      <  1:277483/149‑1 (MQ=255)                                                                                                                          tACCGCCCGTGGGGG‑CCGCGCCAccacgggcggtagatatagtatttgcggccatcgtcgtcgtggaaca                                                                                                       <  2:155721‑M2/70‑48 (MQ=255)                                                                                                                          tACCGCCCGTGGGGG‑CCGCGCCAccacgggcggtagatatagtatttgcggccatcgtcgtcgtggaaca                                                                                                       >  1:155721‑M2/1‑23 (MQ=255)                                                                                                                               cccGTGGGGG‑CCGCGCCAccacaggcggtagatatagtatttgcggccatcgtcgtcgtggaacagggacgggtcaaacccgccgttgcccatcgggattggctcgctccatggcccctcgatggagggcgcggtgacga                            >  2:375394‑M2/1‑18 (MQ=255)                                                                                                                               cccGTGGGGG‑CCGCGCCAccacaggcggtagatatagtatttgcggccatcgtcgtcgtggaacagggacgggtcaaacccgccgttgcccatcgggattggctcgctccatggcccctcgatggagggcgcggtgacga                            <  1:375394‑M2/140‑123 (MQ=255)                                                                                                                                       gg‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAAAACCCTGTTTACCGGCACGCCGCTCTGCTACACCGAAGGCGCGCCCCTGTATCGCCACGCgggt           >  2:168027/1‑148 (MQ=255)                                                                                                                                           cgcgCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAAAACGCTGTTTACCGGCACGCCGCTCTGCTACACCGAAGGCGCGCACCTGTATCGCCACGCGGGATgg        >  2:410618/1‑149 (MQ=255)                                                                                                                                            gcgcCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTAACCCGCAGACCGGCACGCTCCCGCCCCAGCGCAAAACGCTGTTTACCGGCCCGCCGCTCGGCTACACCGAAGGCACGCCCCTGTCGCGCCACGCGGGGTgca       >  2:85770/1‑147 (MQ=255)                                                                                                                                                 accacGGTAACCCGTGCAGCACCAGCGTGTTACAGGCGTTTGACCGGCAGACCGGCACGCTCTCGGCCGGGCGCAAAACGCTGTTTACCGGCACGCCGCTCTGCTACACCGAAGGCGCGCACCTGTATCGCCACGCGGGATGGtactac  <  2:45735/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG‑CCGCGCCACCACAGCAACCCGCACAACACCATCGTGTTACAGGCGTTTGACCCGCAGACCGGCACGCTCTCGCCCGAGCGCAAAACGCTGTTTACCGGCACGCCGCTCTGCTACACCGAAGGCGCGCACCTGTATCGCCACGCGGGATGGTACTAC  >  NC_000913_3_hsa_tpiA/287091‑287382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.