New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 288422	33 (1.390)	4 (0.170)	4/280	2.8	10.7%	coding (741/759 nt)	yagI	CP4‑6 prophage; putative DNA‑binding transcriptional regulator
	?	NC_000913_3_hsa_tpiA	= 288438	34 (1.450)					coding (725/759 nt)	yagI	CP4‑6 prophage; putative DNA‑binding transcriptional regulator
Rejected: Frequency below/above cutoff threshold.

ACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCA  >  NC_000913_3_hsa_tpiA/288284‑288565                                                                                                                                           |                                                                                                                                                gccaCATTGGCGGGGGCGGCTTCTTCGCCGGCGCGTTTGTGGGCCTGCACTGCGAGGCCATCAGCGGCGACGGCTGCTACCCGGACTTCGACTACTCCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCgaga                                                                                                                                       <  2:230113/146‑1 (MQ=255)     cATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAgcgt                                                                                                                                   <  1:398764/149‑2 (MQ=255)     cATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGATAGCACAGCGCGCGGGAGAgcgc                                                                                                                                   >  1:160101/1‑149 (MQ=255)                gcgGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGgcgctctcgcgcgcgct                                                                                                                                 <  1:310725‑M1/141‑18 (MQ=255)                gcgGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGgcgctctcgcgcgcgct                                                                                                                                 >  2:310725‑M1/1‑124 (MQ=255)                       cttcACCGGCGTGTTGGTGAGCCTGCACTGCGAGGAGATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCATCTACGAGCCGGTCTAACGTCTCAGGCCGGGTAGCCCCGCGCGCGCTGTAGCGCTAGCCCGTCccgctggac                                                                                                                 >  2:32442/1‑146 (MQ=255)                        ttcACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGGGCGGGCGCCCGGCCTGCTGACgc                                                                                                                >  1:176236/1‑149 (MQ=255)                        ttcACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAgc                                                                                                                >  2:293970/1‑149 (MQ=255)                           aCCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAgctgc                                                                                                             <  1:346490/149‑1 (MQ=255)                            ccGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCCGCGGCGACGGCTGCTACGCGGACTTCGACTACGTCACCTACGAGCCGGTCTACCGGCTCAGGCCGGGTAGCCCCCCGCGCGCGAGAGCGCGCGCCCGCCCTCCTGAAgctgct                                                                                                            >  2:133987/1‑149 (MQ=255)                                   gTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGaa                                                                                                     >  1:397767/1‑149 (MQ=255)                                         ggcccTGCCCGGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGc                                                                                               <  1:55446/146‑1 (MQ=255)                                             cTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCCAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGCAGCCGCCCGCGGAAATTAGCCCGc                                                                                           >  2:345184/1‑149 (MQ=255)                                             atGCACTGCGAGGACACCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCGACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGc                                                                                           <  1:391127/148‑1 (MQ=255)                                              tGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCtcgcgctctcgcgcgcgctgggctacccggcctga                                                                                                              <  1:167837‑M1/129‑36 (MQ=255)                                              tGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCtcgcgctctcgcgcgcgctgggctacccggcctga                                                                                                              >  2:167837‑M1/1‑94 (MQ=255)                                                  cTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGGAATTAGCCAGCCCcgc                                                                                      >  2:47032/1‑149 (MQ=255)                                                       aGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTGGCCCAGCGCGCGCGAGAGCGCAAGCCCGGCCTGCTGAAGCTGCTCGAGGAAATTAACCAGCTCCGcatcgt                                                                                 >  1:40352/1‑149 (MQ=255)                                                               aGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTCGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCGCCGCGGCGTCCACGCgg                                                                         >  1:5438/1‑149 (MQ=255)                                                                  ggcgAGGGCTGCTAGGCGGCATTCGAGTACTTCATTCCCTGTGCTGTTTAAGGGGTTAGGGCGGGTAGCCCAGCGCGCGCGAGGGCGCGAGCCCGGCCTGCTGAAGCCGCTCGCGGAAATTAGCCCGCTCCGCGTCGTCCACGCGGGAg                                                                      <  2:87609/149‑1 (MQ=255)                                                                  ggcgACTGCTGCTACGCGGGATGCGACTGTTGCACCTCCGGCCCGGTCGACGGTCTCAGGCCGGGTAGCCCAGCGCGCGCCAGAGCGCGAGGCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAg                                                                      <  2:88437/149‑1 (MQ=255)                                                                             ctACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGa                                                           <  1:36019/149‑1 (MQ=255)                                                                               aCGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGGAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACa                                                         >  1:326290/1‑149 (MQ=255)                                                                                      cTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAg                                                  <  2:24593/149‑1 (MQ=255)                                                                                          gACTACTTCACCTACGAGCCGGTCTAACGGCTAAGGCCGGGTAGCCCAGCGCGCGCGAGCGAGAGCGCCCGGCGGGCTGAAGCGGCTCGCGGGAATTCGCCCGCTCCGCCTCTTCCACGCGGGAGGTCAGCGTCAACAGGCTGAGggcg                                              >  2:210887/1‑149 (MQ=255)                                                                                               ctTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGAt                                         <  1:156036/149‑1 (MQ=255)                                                                                                  cACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGAc                                      >  1:397448/1‑149 (MQ=255)                                                                                                   aCCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCGCAGGGCGGCGATGAcg                                     >  1:147806/1‑149 (MQ=255)                                                                                                     cTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCATCGGCCACGCGGGAGTTCTGCGTCTACAGGCTCAGGGCGGCGATGAcgcg                                   <  2:397767/149‑1 (MQ=255)                                                                                                        cgcggcGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGa                                <  2:33998/144‑1 (MQ=255)                                                                                                                  tAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTc                      >  1:235334/1‑149 (MQ=255)                                                                                                                    ccGGCTCAGGCCGGGTAGCCCAGCGCGCGGGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCca                    <  2:326501/148‑1 (MQ=255)                                                                                                                      ggCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGCCTCGTGGTTCcacc                  >  2:172797/1‑148 (MQ=255)                                                                                                                         tCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAgctgggctacccggcctgagccgttagaccggctcgtaggtgaagtagtcgaagtccgcgtagcagccgtcgccgctgatgtcctcgcagtgca                                   <  1:167837‑M2/129‑95 (MQ=255)                                                                                                                         tCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAgctgggctacccggcctgagccgttagaccggctcgtaggtgaagtagtcgaagtccgcgtagcagccgtcgccgctgatgtcctcgcagtgca                                   >  2:167837‑M2/1‑35 (MQ=255)                                                                                                                           aGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACCCCGGc             >  2:265224/1‑149 (MQ=255)                                                                                                                             gCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGCAATTAGCCAGCTCCGCGTCGGCCACGCGGGAGGTCAGCGTCGGCAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCAc           >  1:150565/1‑149 (MQ=255)                                                                                                                             gCCGGGTAGCCCAGCGCGCGCGAGACCGCGAGCCCGGCCTGCTGACGCTGCCCGCGGATATAAGCCAGCTCCGCGCCGTCCACGCGGGACGTCAGCGTCGCCACGCTCAGGGCGGCGATGCCGCGGGGCTCGTGGTTCCACCCCGCCAc           >  2:309886/1‑149 (MQ=255)                                                                                                                                      cccAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACCCCGGCACCGCCCCGCa  >  2:156378/1‑149 (MQ=255)                                                                                                                                         aGCGCGCGCGAGAGCGCGtgggctacccggcctgagccgttagaccggctcgtaggtgaagtagtcgaagtccgcgtagcagccgtcgccgctgatgtcctcgcagtgcaggcccacaaacgcgccggtgaagaagccgc        <  1:310725‑M2/141‑123 (MQ=255)                                                                                                                                         aGCGCGCGCGAGAGCGCGtgggctacccggcctgagccgttagaccggctcgtaggtgaagtagtcgaagtccgcgtagcagccgtcgccgctgatgtcctcgcagtgcaggcccacaaacgcgccggtgaagaagccgc        >  2:310725‑M2/1‑19 (MQ=255)                                                                                                                                           |                                                                                                                                                ACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCA  >  NC_000913_3_hsa_tpiA/288284‑288565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.