New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 28842233 (1.390)4 (0.170) 4/280 2.8 10.7% coding (741/759 nt) yagI CP4‑6 prophage; putative DNA‑binding transcriptional regulator
?NC_000913_3_hsa_tpiA = 288438 34 (1.450)coding (725/759 nt) yagI CP4‑6 prophage; putative DNA‑binding transcriptional regulator
Rejected: Frequency below/above cutoff threshold.

CTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGCCCTGCTCGTT  >  NC_000913_3_hsa_tpiA/288306‑288583
                                                                                                                                    |                                                                                                                                                 
cttcACCGGCGTGTTGGTGAGCCTGCACTGCGAGGAGATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCATCTACGAGCCGGTCTAACGTCTCAGGCCGGGTAGCCCCGCGCGCGCTGTAGCGCTAGCCCGTCccgctggac                                                                                                                                   >  2:32442/1‑146 (MQ=255)
 ttcACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGGGCGGGCGCCCGGCCTGCTGACgc                                                                                                                                  >  1:176236/1‑149 (MQ=255)
 ttcACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAgc                                                                                                                                  >  2:293970/1‑149 (MQ=255)
    aCCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAgctgc                                                                                                                               <  1:346490/149‑1 (MQ=255)
     ccGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCCGCGGCGACGGCTGCTACGCGGACTTCGACTACGTCACCTACGAGCCGGTCTACCGGCTCAGGCCGGGTAGCCCCCCGCGCGCGAGAGCGCGCGCCCGCCCTCCTGAAgctgct                                                                                                                              >  2:133987/1‑149 (MQ=255)
            gTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGaa                                                                                                                       >  1:397767/1‑149 (MQ=255)
                  ggcccTGCCCGGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGc                                                                                                                 <  1:55446/146‑1 (MQ=255)
                      cTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCCAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGCAGCCGCCCGCGGAAATTAGCCCGc                                                                                                             >  2:345184/1‑149 (MQ=255)
                      atGCACTGCGAGGACACCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCGACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGc                                                                                                             <  1:391127/148‑1 (MQ=255)
                           cTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGGAATTAGCCAGCCCcgc                                                                                                        >  2:47032/1‑149 (MQ=255)
                                aGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTGGCCCAGCGCGCGCGAGAGCGCAAGCCCGGCCTGCTGAAGCTGCTCGAGGAAATTAACCAGCTCCGcatcgt                                                                                                   >  1:40352/1‑149 (MQ=255)
                                        aGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTCGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCGCCGCGGCGTCCACGCgg                                                                                           >  1:5438/1‑149 (MQ=255)
                                           ggcgAGGGCTGCTAGGCGGCATTCGAGTACTTCATTCCCTGTGCTGTTTAAGGGGTTAGGGCGGGTAGCCCAGCGCGCGCGAGGGCGCGAGCCCGGCCTGCTGAAGCCGCTCGCGGAAATTAGCCCGCTCCGCGTCGTCCACGCGGGAg                                                                                        <  2:87609/149‑1 (MQ=255)
                                           ggcgACTGCTGCTACGCGGGATGCGACTGTTGCACCTCCGGCCCGGTCGACGGTCTCAGGCCGGGTAGCCCAGCGCGCGCCAGAGCGCGAGGCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAg                                                                                        <  2:88437/149‑1 (MQ=255)
                                                      ctACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGa                                                                             <  1:36019/149‑1 (MQ=255)
                                                        aCGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGGAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACa                                                                           >  1:326290/1‑149 (MQ=255)
                                                               cTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAg                                                                    <  2:24593/149‑1 (MQ=255)
                                                                   gACTACTTCACCTACGAGCCGGTCTAACGGCTAAGGCCGGGTAGCCCAGCGCGCGCGAGCGAGAGCGCCCGGCGGGCTGAAGCGGCTCGCGGGAATTCGCCCGCTCCGCCTCTTCCACGCGGGAGGTCAGCGTCAACAGGCTGAGggcg                                                                >  2:210887/1‑149 (MQ=255)
                                                                        ctTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGAt                                                           <  1:156036/149‑1 (MQ=255)
                                                                           cACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGAc                                                        >  1:397448/1‑149 (MQ=255)
                                                                            aCCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCGCAGGGCGGCGATGAcg                                                       >  1:147806/1‑149 (MQ=255)
                                                                              cTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCATCGGCCACGCGGGAGTTCTGCGTCTACAGGCTCAGGGCGGCGATGAcgcg                                                     <  2:397767/149‑1 (MQ=255)
                                                                                 cgcggcGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGa                                                  <  2:33998/144‑1 (MQ=255)
                                                                                           tAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTc                                        >  1:235334/1‑149 (MQ=255)
                                                                                             ccGGCTCAGGCCGGGTAGCCCAGCGCGCGGGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCca                                      <  2:326501/148‑1 (MQ=255)
                                                                                               ggCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGCCTCGTGGTTCcacc                                    >  2:172797/1‑148 (MQ=255)
                                                                                                  tCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAgctgggctacccggcctgagccgttagaccggctcgtaggtgaagtagtcgaagtccgcgtagcagccgtcgccgctgatgtcctcgcagtgca                                                     >  2:167837‑M2/1‑35 (MQ=255)
                                                                                                  tCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAgctgggctacccggcctgagccgttagaccggctcgtaggtgaagtagtcgaagtccgcgtagcagccgtcgccgctgatgtcctcgcagtgca                                                     <  1:167837‑M2/129‑95 (MQ=255)
                                                                                                    aGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACCCCGGc                               >  2:265224/1‑149 (MQ=255)
                                                                                                      gCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGCAATTAGCCAGCTCCGCGTCGGCCACGCGGGAGGTCAGCGTCGGCAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCAc                             >  1:150565/1‑149 (MQ=255)
                                                                                                      gCCGGGTAGCCCAGCGCGCGCGAGACCGCGAGCCCGGCCTGCTGACGCTGCCCGCGGATATAAGCCAGCTCCGCGCCGTCCACGCGGGACGTCAGCGTCGCCACGCTCAGGGCGGCGATGCCGCGGGGCTCGTGGTTCCACCCCGCCAc                             >  2:309886/1‑149 (MQ=255)
                                                                                                               cccAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACCCCGGCACCGCCCCGCa                    >  2:156378/1‑149 (MQ=255)
                                                                                                                  aGCGCGCGCGAGAGCGCGtgggctacccggcctgagccgttagaccggctcgtaggtgaagtagtcgaagtccgcgtagcagccgtcgccgctgatgtcctcgcagtgcaggcccacaaacgcgccggtgaagaagccgc                          >  2:310725‑M2/1‑19 (MQ=255)
                                                                                                                  aGCGCGCGCGAGAGCGCGtgggctacccggcctgagccgttagaccggctcgtaggtgaagtagtcgaagtccgcgtagcagccgtcgccgctgatgtcctcgcagtgcaggcccacaaacgcgccggtgaagaagccgc                          <  1:310725‑M2/141‑123 (MQ=255)
                                                                                                                       gcgcgAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGc            >  2:413425/1‑149 (MQ=255)
                                                                                                                       gcgcgAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCCCCCGc            >  2:44174/1‑149 (MQ=255)
                                                                                                                         gcgAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGccc          >  1:262767/1‑149 (MQ=255)
                                                                                                                                 gcgAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGCCCTGCTCGtt  >  2:376565/1‑149 (MQ=255)
                                                                                                                                    |                                                                                                                                                 
CTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGCCCTGCTCGTT  >  NC_000913_3_hsa_tpiA/288306‑288583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.