New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 3213480	19 (0.800)	4 (0.180)	4/272	2.7	16.3%	coding (434/1842 nt)	rpoD	RNA polymerase, sigma 70 (sigma D) factor
	?	NC_000913_3_hsa_tpiA	= 3213501	23 (1.010)					coding (455/1842 nt)	rpoD	RNA polymerase, sigma 70 (sigma D) factor
Rejected: Frequency below/above cutoff threshold.

GAAATGGGCACCGTTGAACTGTTGACCCGCGAAGGCGAAATTGACATCGCTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCACCTACCGCCACTCACGTCGGTTCTGAGCTTTCCCAGGAAGATCTGGACGATGACG  >  NC_000913_3_hsa_tpiA/3213356‑3213626                                                                                                                             |                                                                                                                                                   gAAAGGGGCACCGTTGAACTGTTGACCCGCGAAGGCGAAATTGACATCGCTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAagc                                                                                                                            >  1:21482‑M2/1‑146 (MQ=255)     tGGGCACCGTTGAACTGTTGACCCGCGAAGGCGAAATTGACATCGCTAAGCGTAGTGAAGACGGGATCTACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCagaa                                                                                                                        <  1:335917/149‑1 (MQ=255)            cGTTGAACTGTTGACCCGCGAAGGCGAAATTGACATCGCTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAgcgc                                                                                                                 >  1:284866/1‑149 (MQ=255)             gTTGAACTGTTGACCCGCGAAGGCGAAATTGACATCGCTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGcgcg                                                                                                                >  1:28920/1‑149 (MQ=255)                    tGTTGACCCGCGAAGGCGAAATTGACATCGCTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTtcaacacgatcgtactgttccagcagatagg                                                                                                                     <  2:288552‑M1/137‑32 (MQ=255)                    tGTTGACCCGCGAAGGCGAAATTGACATCGCTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTtcaacacgatcgtactgttccagcagatagg                                                                                                                     >  1:288552‑M1/1‑106 (MQ=255)                             gcgAAGGCGAAATTGACATCGCTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATc                                                                                                >  1:179548/1‑149 (MQ=255)                               gAAGGCGAAATTGACATCGCTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCAc                                                                                              <  1:253151/149‑1 (MQ=255)                                aaGGCGAAATTGACATCGCTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGGTGAAGCAGAAGAAGCGGGTCTGTCCGATCTGATCAcc                                                                                             <  1:416395/149‑1 (MQ=255)                                              aTCGCTAAGCGTATTGACGACGGGATCAACCAGGTTCAATACTCCGTCGCTGAATATCCGGAAGCGATCACCTATCTGCTGCAACAGTACGATCGTGTTGCAGCAGCAAAAGCGCGTCTGTCCGATCTGATCACCGGCTCTGATGAccc                                                                               >  2:363333/1‑149 (MQ=255)                                              aTCGCTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAagcagataggtgatcgcttccggatattcagcaacggagcattgac                                                                                 <  1:367266‑M2/147‑47 (MQ=255)                                              aTCGCTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAagcagataggtgatcgcttccggatattcagcaacggagcattgaa                                                                                 >  2:367266‑M2/1‑101 (MQ=255)                                                 gCTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGaa                                                                            >  1:249523/1‑149 (MQ=255)                                                  cTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATAGCGTTGAAGCACAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAAc                                                                           >  1:222589/1‑149 (MQ=255)                                                                   gggATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTCATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGc                                                          >  2:322469/1‑149 (MQ=255)                                                                      aTCAACCAGGTTCAATGCTCCGCTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCAcc                                                       <  1:96692/149‑1 (MQ=255)                                                                      aTCAAACAGGTTAAAGGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCAcc                                                       <  1:33856/149‑1 (MQ=255)                                                                          aCCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCACCTAcc                                                   <  1:403119/149‑1 (MQ=255)                                                                               gtacAATGCTCCGTTGCTGAATATCCGGAAGCGAGCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGATGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCACCTACCGCCAc                                              <  2:84128/146‑1 (MQ=255)                                                                                ttCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTtcaacacgatcgtactgttccagcagataggtgatcgcttccggatattcagcaacggagcattgaacctggttgatcccgtcttcaatacgcttagcgat                                               >  2:367266‑M1/1‑46 (MQ=255)                                                                                gtcAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTtcaacacgatcgtactgttccagcagataggtgatcgcttccggatattcagcaacggagcattgaacctggttgatcccgtcttcaatacgcttagcgat                                               <  1:367266‑M1/146‑102 (MQ=255)                                                                                               cTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTCATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCACCTACCGCCACTCACGTCGGTTCTGAg                              <  1:319045/149‑1 (MQ=255)                                                                                                tGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGAGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGCCACCTACCGCCACTCACGCAGGTTCTGAGc                             >  2:192652/1‑149 (MQ=255)                                                                                                                  cACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCACCTACCGCCACTCACGTCGGTTCTGAGCTTTCCCAGGAAGATCTgg           <  2:284866/149‑1 (MQ=255)                                                                                                                    ccTATCTGCTGGAACAGTACGATCGTGTTGAagcagataggtgatcgcttccggatattcagcaacggagcattgaacctggttgatcccgtcttcaatacgcttagcgatgtcaatttcgccttcgcgggtcaaca                     >  1:288552‑M2/1‑31 (MQ=255)                                                                                                                    ccTATCTGCTGGAACAGTACGATCGTGTTGAagcagataggtgatcgcttccggatattcagcaacggagcattgaacctggttgatcccgtcttcaatacgcttagcgatgtcaatttcgccttcgcgggtcaaca                     <  2:288552‑M2/137‑107 (MQ=255)                                                                                                                      tATCGGCTGGAACAGGACGATCGTGTTGAAGCTGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCACCTACCGCCACTCACGTCGGTTCTGAGCTTTCCCAGGAAGATCTGGACGa       <  2:98526/149‑1 (MQ=255)                                                                                                                       aTCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCACCTACCGCCACTCACGTCGGTTCTGAGCTTTCCCAGGAAGATCTGGACGAt      >  2:322361/1‑149 (MQ=255)                                                                                                                           gCTtcaacacgatcgtactgttccagcagataggtgatcgcttccggatattcagcaacggagcattgaacctggttgatcccgtcttcaatacgcttagcgatgtcaatttcgccttcgcgggtcaacagttcaacggtgcccctttc  >  1:21482‑M1/1‑3 (MQ=255)                                                                                                                             |                                                                                                                                                   GAAATGGGCACCGTTGAACTGTTGACCCGCGAAGGCGAAATTGACATCGCTAAGCGTATTGAAGACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGCACCTACCGCCACTCACGTCGGTTCTGAGCTTTCCCAGGAAGATCTGGACGATGACG  >  NC_000913_3_hsa_tpiA/3213356‑3213626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.