New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	4519284 =	27 (1.130)	3 (0.130)	3/268	3.0	11.1%	intergenic (+78/+36)	insB1/yjhU	IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element
	?	NC_000913_3_hsa_tpiA	4519308 =	23 (1.030)					intergenic (+102/+12)	insB1/yjhU	IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCG  >  NC_000913_3_hsa_tpiA/4519140‑4519416                                                                                                                                                 |                                                                                                                                      ctcAAAAGCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGcc                                                                                                                                   <  1:335873/149‑1 (MQ=255)  tcAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAATTACTggac                                                                                                                                  >  2:211090/1‑146 (MQ=255)     aaaTCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCat                                                                                                                               <  1:345169/149‑1 (MQ=255)          ggTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTa                                                                                                                          <  2:241071/149‑1 (MQ=255)              gAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATg                                                                                                                      <  2:359946/149‑1 (MQ=255)              gAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATg                                                                                                                      >  1:280713/1‑149 (MQ=255)                       gACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAgttg                                                                                                             >  2:227794/1‑149 (MQ=255)                        aCAAGGTCTTCGGGCATAATCTTTACATGGGAGACTGTCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAACCAATAAAATCCTGCCCCATATCTACATGGGGCAgttgt                                                                                                            <  1:287326/149‑1 (MQ=255)                          aaGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTc                                                                                                          >  1:263080/1‑149 (MQ=255)                                  cGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCtttt                                                                                                  <  2:159767/149‑1 (MQ=255)                                   gggCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTa                                                                                                 <  2:306474/149‑1 (MQ=255)                                     gCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTCgt                                                                                               >  2:192494/1‑149 (MQ=255)                                               aaCATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTc                                                                                     >  2:310585/1‑149 (MQ=255)                                                      aaCACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGTTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCAATATCTACATTGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGcc                                                                              >  2:399601/1‑149 (MQ=255)                                                       acacTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTATTGTGGTCATTCACAccccc                                                                             >  2:310353/1‑148 (MQ=255)                                                                     ttGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTc                                                                                                          <  1:83805/106‑1 (MQ=255)                                                                     ttGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTc                                                                                                          >  2:83805/1‑106 (MQ=255)                                                                                         ttttATTTCATATATTGTGGGTATTGTTCTTATGATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGTGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAg                                          <  2:368321/148‑1 (MQ=255)                                                                                             aTTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAACAACTCTG‑CCGTTCCTTCATCAACAATCAGGTcc                                      <  1:227794/149‑1 (MQ=255)                                                                                                           gggTATTGTTCTTATTATCGCGGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTTATCAACAATCAGGTCCGTGACATAtcctcc                        >  1:199978/1‑149 (MQ=255)                                                                                                              tATTGTTCTTATTATCGCCGCTAATCCATAAAATCCTGCCCCATATCTACATGGGTCAGTGGTTCATTGTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCATGACATATCCTCCcag                     >  2:107705/1‑149 (MQ=255)                                                                                                                  gTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCACCAATCAGGTCCGTGACCTATCATCCcagcaga                 >  1:394142/1‑148 (MQ=255)                                                                                                                   ttCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCGAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGGAggg                >  1:251747/1‑149 (MQ=255)                                                                                                                    tCTTATTATCGCAGCGAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGc               <  1:160710/149‑1 (MQ=255)                                                                                                                      ttattaTCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCAc             <  1:211090/149‑1 (MQ=255)                                                                                                                          tatCGCCGCTAATCAATAAAATCCTGCCCCATATCTCCATGGTGCAGTTGTTCATTCTTTTAGTGTGCTGGTACGGGTGCAAGCAACAA‑GCTGTCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCaa         <  1:414109/149‑1 (MQ=255)                                                                                                                                 gcgaaTCAATAAAATCCAGCCCCATAACTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCg  <  2:130532/146‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                      CTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCG  >  NC_000913_3_hsa_tpiA/4519140‑4519416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.